MIR424 (microRNA mir-424) - Rat Genome Database

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Gene: MIR424 (microRNA mir-424) Canis lupus familiaris
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Symbol: MIR424 (Ensembl: cfa-mir-424)
Name: microRNA mir-424 (Ensembl:cfa-mir-424)
RGD ID: 12163671
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-424; microRNA 424
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: not annotated on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X105,183,437 - 105,183,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX105,183,437 - 105,183,493 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX91,294,066 - 91,294,122 (-)NCBIDog10K_Boxer_Tasha
UMICH_Zoey_3.1X104,456,601 - 104,456,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X106,322,578 - 106,322,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X106,114,264 - 106,114,320 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR424
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X105,183,437 - 105,183,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX105,183,437 - 105,183,493 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX91,294,066 - 91,294,122 (-)NCBIDog10K_Boxer_Tasha
UMICH_Zoey_3.1X104,456,601 - 104,456,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X106,322,578 - 106,322,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X106,114,264 - 106,114,320 (-)NCBIUU_Cfam_GSD_1.0
MIR424
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X134,546,614 - 134,546,711 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX134,546,614 - 134,546,711 (-)EnsemblGRCh38hg38GRCh38
GRCh37X133,680,644 - 133,680,741 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,508,309 - 133,508,406 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX134,067,462 - 134,067,559 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX123,079,482 - 123,079,579 (-)NCBIHuRef
CHM1_1X133,592,397 - 133,592,494 (-)NCBICHM1_1
T2T-CHM13v2.0X132,871,802 - 132,871,899 (-)NCBIT2T-CHM13v2.0
Mir322
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,143,132 - 52,143,226 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,143,132 - 52,143,226 (-)EnsemblGRCm39 Ensembl
GRCm38X53,054,255 - 53,054,349 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,054,255 - 53,054,349 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,407,432 - 50,407,526 (-)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX40,480,256 - 40,480,350 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.31NCBI
Mir322
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,726,147 - 137,726,241 (-)NCBIGRCr8
mRatBN7.2X132,806,594 - 132,806,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,806,594 - 132,806,688 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX134,966,643 - 134,966,737 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,549,491 - 138,549,585 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X136,115,203 - 136,115,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X158,148,161 - 158,148,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,148,161 - 158,148,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X152,773,468 - 152,773,562 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic MapXq36NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system
High
Medium
Low 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000039991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX105,183,437 - 105,183,493 (-)Ensembl
RefSeq Acc Id: NR_049395
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X105,183,437 - 105,183,493 (-)NCBI
Dog10K_Boxer_TashaX91,294,066 - 91,294,122 (-)NCBI
UMICH_Zoey_3.1X104,456,601 - 104,456,657 (-)NCBI
UNSW_CanFamBas_1.0X106,322,578 - 106,322,634 (-)NCBI
UU_Cfam_GSD_1.0X106,114,264 - 106,114,320 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025708 Ensembl
miRBase MI0008169 ENTREZGENE
NCBI Gene MIR424 ENTREZGENE
RNAcentral URS00002BCF86 RNACentral
  URS00007E4689 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR424  microRNA mir-424    microRNA 424  Symbol and/or name change 5135510 APPROVED