IL17RD (interleukin 17 receptor D) - Rat Genome Database

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Gene: IL17RD (interleukin 17 receptor D) Canis lupus familiaris
Analyze
Symbol: IL17RD
Name: interleukin 17 receptor D
RGD ID: 12161123
Description: ENCODES a protein that exhibits interleukin-17 receptor activity (inferred); INVOLVED IN cytokine-mediated signaling pathway (inferred); negative regulation of epithelial to mesenchymal transition (inferred); negative regulation of transforming growth factor beta receptor signaling pathway (inferred); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); arteriovenous malformations of the brain (ortholog); Brain Injuries (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17 receptor D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,240,728 - 33,306,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,240,767 - 33,303,404 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,168,071 - 33,234,132 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,512,962 - 33,579,003 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,513,011 - 33,579,087 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12032,961,714 - 33,027,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,320,255 - 33,386,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,491,831 - 33,557,800 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IL17RD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,240,728 - 33,306,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,240,767 - 33,303,404 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,168,071 - 33,234,132 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,512,962 - 33,579,003 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,513,011 - 33,579,087 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12032,961,714 - 33,027,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,320,255 - 33,386,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,491,831 - 33,557,800 (+)NCBIUU_Cfam_GSD_1.0
IL17RD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38357,089,982 - 57,170,317 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl357,089,982 - 57,170,306 (-)EnsemblGRCh38hg38GRCh38
GRCh37357,124,010 - 57,204,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36357,099,050 - 57,179,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 34357,103,317 - 57,179,353NCBI
Celera357,089,588 - 57,164,961 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef357,172,083 - 57,248,123 (-)NCBIHuRef
CHM1_1357,074,359 - 57,149,632 (-)NCBICHM1_1
T2T-CHM13v2.0357,130,265 - 57,210,589 (-)NCBIT2T-CHM13v2.0
Il17rd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391426,760,990 - 26,829,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1426,760,898 - 26,829,243 (+)EnsemblGRCm39 Ensembl
GRCm381427,038,964 - 27,107,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,038,941 - 27,107,286 (+)EnsemblGRCm38mm10GRCm38
MGSCv371427,852,187 - 27,920,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361425,865,966 - 25,929,393 (+)NCBIMGSCv36mm8
Celera1423,308,506 - 23,339,406 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.09NCBI
Il17rd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,235,172 - 2,489,827 (+)NCBIGRCr8
mRatBN7.2162,228,438 - 2,295,122 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,228,287 - 2,292,556 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,235,197 - 2,296,128 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,380,882 - 3,441,821 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,241,373 - 2,302,260 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,670,471 - 2,737,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,670,618 - 2,731,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,642,868 - 2,709,804 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,291,838 - 2,354,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera162,194,794 - 2,255,588 (+)NCBICelera
Cytogenetic Map16p16NCBI
Il17rd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,848,820 - 6,898,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,842,756 - 6,873,195 (-)NCBIChiLan1.0ChiLan1.0
IL17RD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2257,069,376 - 57,145,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1357,074,147 - 57,149,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0357,023,622 - 57,098,869 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1358,234,422 - 58,309,480 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl358,240,835 - 58,309,409 (-)Ensemblpanpan1.1panPan2
Il17rd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118174,303,076 - 174,369,286 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364737,447,292 - 7,507,830 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364737,447,292 - 7,507,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17RD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1338,939,316 - 39,006,690 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11338,935,631 - 39,006,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21342,822,716 - 42,917,594 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL17RD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12218,416,143 - 18,489,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2218,416,443 - 18,434,271 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041148,380,962 - 148,449,510 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il17rd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822150,992 - 214,107 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822150,955 - 219,939 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL17RD
539 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000012823   ⟹   ENSCAFP00000011872
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2033,240,767 - 33,303,404 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845041412   ⟹   ENSCAFP00845032471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2033,513,011 - 33,579,087 (+)Ensembl
RefSeq Acc Id: XM_038427439   ⟹   XP_038283367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02033,512,962 - 33,579,003 (+)NCBI
RefSeq Acc Id: XM_038427440   ⟹   XP_038283368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02033,512,962 - 33,579,003 (+)NCBI
RefSeq Acc Id: XM_038455665   ⟹   XP_038311593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2033,168,071 - 33,234,132 (+)NCBI
RefSeq Acc Id: XM_038503152   ⟹   XP_038359080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12032,961,714 - 33,027,878 (+)NCBI
RefSeq Acc Id: XM_038503153   ⟹   XP_038359081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12032,961,714 - 33,027,878 (+)NCBI
RefSeq Acc Id: XM_038566114   ⟹   XP_038422042
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02033,491,831 - 33,557,800 (+)NCBI
RefSeq Acc Id: XM_038566115   ⟹   XP_038422043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02033,491,831 - 33,557,800 (+)NCBI
RefSeq Acc Id: XM_038630262   ⟹   XP_038486190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02033,320,255 - 33,386,452 (+)NCBI
RefSeq Acc Id: XM_038630263   ⟹   XP_038486191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02033,320,255 - 33,386,452 (+)NCBI
RefSeq Acc Id: XM_541835   ⟹   XP_541835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12033,240,728 - 33,306,727 (+)NCBI
Dog10K_Boxer_Tasha2033,168,071 - 33,234,132 (+)NCBI
Sequence:
RefSeq Acc Id: XP_541835   ⟸   XM_541835
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K088 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000011872   ⟸   ENSCAFT00000012823
RefSeq Acc Id: XP_038359080   ⟸   XM_038503152
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038359081   ⟸   XM_038503153
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038486190   ⟸   XM_038630262
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038486191   ⟸   XM_038630263
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038283367   ⟸   XM_038427439
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K088 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283368   ⟸   XM_038427440
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S756 (UniProtKB/TrEMBL),   A0A8P0NA96 (UniProtKB/TrEMBL),   A0A8C0K088 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311593   ⟸   XM_038455665
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S756 (UniProtKB/TrEMBL),   A0A8P0NA96 (UniProtKB/TrEMBL),   A0A8C0K088 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422042   ⟸   XM_038566114
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K088 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422043   ⟸   XM_038566115
- Peptide Label: isoform X2
- UniProtKB: A0A8C0K088 (UniProtKB/TrEMBL),   A0A8I3S756 (UniProtKB/TrEMBL),   A0A8P0NA96 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845032471   ⟸   ENSCAFT00845041412
Protein Domains
SEFIR

Promoters
RGD ID:13686835
Promoter ID:EPDNEW_C4902
Type:initiation region
Name:IL17RD_1
Description:interleukin 17 receptor D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12033,240,761 - 33,240,821EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008023 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845023448 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012823.4 UniProtKB/TrEMBL
  ENSCAFT00845041412 ENTREZGENE
  ENSCAFT00845041412.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11530 UniProtKB/TrEMBL
InterPro IL-17_rcpt-like UniProtKB/TrEMBL
  IL17R_D_N UniProtKB/TrEMBL
  SEFIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
NCBI Gene IL17RD ENTREZGENE
PANTHER INTERLEUKIN-17 RECEPTOR D UniProtKB/TrEMBL
  PTHR15583 UniProtKB/TrEMBL
Pfam IL17R_D_N UniProtKB/TrEMBL
  SEFIR UniProtKB/TrEMBL
PROSITE SEFIR UniProtKB/TrEMBL
Superfamily-SCOP SSF52200 UniProtKB/TrEMBL
UniProt A0A8C0K088 ENTREZGENE
  A0A8I3S756 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NA96 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41949 ENTREZGENE