RARRES2 (retinoic acid receptor responder 2) - Rat Genome Database

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Gene: RARRES2 (retinoic acid receptor responder 2) Canis lupus familiaris
Analyze
Symbol: RARRES2
Name: retinoic acid receptor responder 2
RGD ID: 12160894
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN brown fat cell differentiation (ortholog); cellular response to insulin stimulus (ortholog); positive regulation of fat cell differentiation (ortholog); ASSOCIATED WITH essential hypertension (ortholog); genetic disease (ortholog); glucose intolerance (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinoic acid receptor responder protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,671,345 - 14,675,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,671,130 - 14,674,926 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,279,856 - 15,283,838 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,386,098 - 16,390,089 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,386,104 - 16,389,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,766,189 - 14,770,162 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,347,148 - 15,351,121 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,397,620 - 15,401,605 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RARRES2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,671,345 - 14,675,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,671,130 - 14,674,926 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,279,856 - 15,283,838 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,386,098 - 16,390,089 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,386,104 - 16,389,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,766,189 - 14,770,162 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,347,148 - 15,351,121 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,397,620 - 15,401,605 (-)NCBIUU_Cfam_GSD_1.0
RARRES2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387150,338,329 - 150,341,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7150,338,317 - 150,341,662 (-)EnsemblGRCh38hg38GRCh38
GRCh377150,035,418 - 150,038,718 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367149,666,351 - 149,669,639 (-)NCBINCBI36Build 36hg18NCBI36
Build 347149,473,066 - 149,476,354NCBI
Celera7144,592,497 - 144,595,853 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7143,851,911 - 143,855,271 (-)NCBIHuRef
CHM1_17150,042,248 - 150,045,604 (-)NCBICHM1_1
T2T-CHM13v2.07151,516,581 - 151,519,881 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27149,373,258 - 149,376,614 (-)NCBI
Rarres2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,546,630 - 48,549,778 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl648,546,630 - 48,549,723 (-)EnsemblGRCm39 Ensembl
GRCm38648,569,696 - 48,572,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,569,696 - 48,572,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv37648,519,697 - 48,522,669 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36648,499,284 - 48,502,256 (-)NCBIMGSCv36mm8
Celera649,080,699 - 49,083,671 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.55NCBI
Rarres2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,853,450 - 78,856,652 (-)NCBIGRCr8
mRatBN7.2477,522,549 - 77,525,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl477,522,535 - 77,525,556 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,729,894 - 82,732,878 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0478,505,395 - 78,508,379 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,945,676 - 76,948,660 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0478,205,809 - 78,208,956 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,205,812 - 78,208,767 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,869,493 - 142,872,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,659,507 - 76,662,465 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1476,935,636 - 76,938,595 (-)NCBI
Celera472,460,060 - 72,463,020 (-)NCBICelera
Cytogenetic Map4q24NCBI
Rarres2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,955,068 - 4,956,956 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,954,809 - 4,957,724 (-)NCBIChiLan1.0ChiLan1.0
RARRES2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26186,784,917 - 186,788,469 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1738,795,181 - 38,798,579 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07141,953,600 - 141,956,991 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,106,275 - 154,109,635 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,106,275 - 154,109,635 (-)Ensemblpanpan1.1panPan2
Rarres2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,951,051 - 6,954,267 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,947,960 - 5,952,579 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,949,161 - 5,952,367 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARRES2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1855,903,699 - 55,906,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11855,903,693 - 55,906,976 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RARRES2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121118,487,199 - 118,490,561 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21118,487,506 - 118,489,516 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607214,446,853 - 14,450,217 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rarres2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,139,006 - 6,140,679 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,138,236 - 6,140,922 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RARRES2
73 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 3
Medium 5 5 19 6 6 6 6 12 5 10 6
Low 6 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005629654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022403838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000007329   ⟹   ENSCAFP00000006789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1614,671,351 - 14,674,920 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000059498   ⟹   ENSCAFP00000064282
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1614,671,130 - 14,674,926 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845016493   ⟹   ENSCAFP00845012827
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1616,386,104 - 16,389,726 (-)Ensembl
RefSeq Acc Id: XM_005629654   ⟹   XP_005629711
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11614,671,345 - 14,675,000 (-)NCBI
Dog10K_Boxer_Tasha1615,279,856 - 15,283,557 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038452535   ⟹   XP_038308463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,279,856 - 15,283,838 (-)NCBI
RefSeq Acc Id: XM_038497267   ⟹   XP_038353195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,766,189 - 14,769,881 (-)NCBI
RefSeq Acc Id: XM_038497268   ⟹   XP_038353196
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,766,189 - 14,770,162 (-)NCBI
RefSeq Acc Id: XM_038559692   ⟹   XP_038415620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,397,620 - 15,401,324 (-)NCBI
RefSeq Acc Id: XM_038559693   ⟹   XP_038415621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,397,620 - 15,401,605 (-)NCBI
RefSeq Acc Id: XM_038623692   ⟹   XP_038479620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,347,148 - 15,350,840 (-)NCBI
RefSeq Acc Id: XM_038623693   ⟹   XP_038479621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,347,148 - 15,351,121 (-)NCBI
RefSeq Acc Id: XM_038689451   ⟹   XP_038545379
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,386,098 - 16,389,808 (-)NCBI
RefSeq Acc Id: XM_038689452   ⟹   XP_038545380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,386,098 - 16,390,089 (-)NCBI
RefSeq Acc Id: XP_005629711   ⟸   XM_005629654
- UniProtKB: A0A8C0PHW2 (UniProtKB/TrEMBL),   A0A8P0SA67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000064282   ⟸   ENSCAFT00000059498
RefSeq Acc Id: ENSCAFP00000006789   ⟸   ENSCAFT00000007329
RefSeq Acc Id: XP_038353196   ⟸   XM_038497268
RefSeq Acc Id: XP_038353195   ⟸   XM_038497267
RefSeq Acc Id: XP_038479621   ⟸   XM_038623693
RefSeq Acc Id: XP_038479620   ⟸   XM_038623692
RefSeq Acc Id: XP_038545380   ⟸   XM_038689452
- UniProtKB: A0A8I3NN14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038545379   ⟸   XM_038689451
- UniProtKB: A0A8I3NN14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308463   ⟸   XM_038452535
- UniProtKB: A0A8C0PHW2 (UniProtKB/TrEMBL),   A0A8P0SA67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415621   ⟸   XM_038559693
- UniProtKB: A0A8I3NN14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415620   ⟸   XM_038559692
- UniProtKB: A0A8I3NN14 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845012827   ⟸   ENSCAFT00845016493


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004555 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025114 UniProtKB/TrEMBL
  ENSCAFG00040019767 UniProtKB/TrEMBL
  ENSCAFG00845009354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007329.5 UniProtKB/TrEMBL
  ENSCAFT00030046336.1 UniProtKB/TrEMBL
  ENSCAFT00040036540.1 UniProtKB/TrEMBL
  ENSCAFT00845016493 ENTREZGENE
  ENSCAFT00845016493.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Chemerin UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
KEGG Report cfa:475532 UniProtKB/TrEMBL
NCBI Gene RARRES2 ENTREZGENE
PANTHER PTHR15106 UniProtKB/TrEMBL
  RETINOIC ACID RECEPTOR RESPONDER PROTEIN 2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A8C0PHW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NN14 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SA67 ENTREZGENE
UniProt Secondary A0A8P0SA67 UniProtKB/TrEMBL
VGNC ID VGNC:45355 ENTREZGENE