LOC100687556 (proteasome 20S subunit alpha 4) - Rat Genome Database

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Gene: LOC100687556 (proteasome 20S subunit alpha 4) Canis lupus familiaris
Analyze
Symbol: LOC100687556 (Ensembl: PSMA4)
Name: proteasome 20S subunit alpha 4
RGD ID: 12159722
Description: INVOLVED IN proteolysis involved in protein catabolic process (inferred); FOUND IN P-body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit alpha 4; proteasome subunit alpha type-4; PSMA4
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: not annotated on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X53,245,249 - 53,246,357 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX53,244,972 - 53,246,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX44,070,826 - 44,095,578 (-)NCBIDog10K_Boxer_Tasha
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Variants

.
Variants in LOC100687556
56 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000026490   ⟹   ENSCAFP00000048837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX53,244,972 - 53,246,154 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067172   ⟹   ENSCAFP00000062434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX53,244,972 - 53,246,038 (-)Ensembl
RefSeq Acc Id: XM_038464795   ⟹   XP_038320723
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX44,070,826 - 44,095,578 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038320723 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000062434.2
  ENSCAFP00030036096.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000062434   ⟸   ENSCAFT00000067172
RefSeq Acc Id: ENSCAFP00000048837   ⟸   ENSCAFT00000026490
RefSeq Acc Id: XP_038320723   ⟸   XM_038464795


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016728 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022514 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000067172.2 UniProtKB/TrEMBL
  ENSCAFT00030041373.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
NCBI Gene PSMA4 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/TrEMBL
  PTHR11599:SF13 UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A8C0P7H7_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100687556  proteasome 20S subunit alpha 4  PSMA4  proteasome 20S subunit alpha 4  Symbol and/or name change 5135510 APPROVED
2019-09-03 PSMA4  proteasome 20S subunit alpha 4  PSMA4  proteasome subunit alpha 4  Symbol and/or name change 5135510 APPROVED