LY6E (lymphocyte antigen 6 family member E) - Rat Genome Database

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Gene: LY6E (lymphocyte antigen 6 family member E) Canis lupus familiaris
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Symbol: LY6E
Name: lymphocyte antigen 6 family member E
RGD ID: 12158948
Description: ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); adrenal gland development (ortholog); epinephrine secretion (ortholog); ASSOCIATED WITH Human Influenza (ortholog); pancreatic cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: lymphocyte antigen 6 complex, locus E; lymphocyte antigen 6E
RGD Orthologs
Human
Mouse
Rat
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11336,926,776 - 36,930,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1336,925,980 - 36,974,979 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,879,527 - 36,883,015 (+)NCBI
ROS_Cfam_1.01337,398,524 - 37,402,004 (+)NCBI
UMICH_Zoey_3.11337,071,189 - 37,074,676 (+)NCBI
UNSW_CanFamBas_1.01337,189,559 - 37,193,039 (+)NCBI
UU_Cfam_GSD_1.01337,666,368 - 37,669,857 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LY6E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11336,926,776 - 36,930,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1336,925,980 - 36,974,979 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,879,527 - 36,883,015 (+)NCBI
ROS_Cfam_1.01337,398,524 - 37,402,004 (+)NCBI
UMICH_Zoey_3.11337,071,189 - 37,074,676 (+)NCBI
UNSW_CanFamBas_1.01337,189,559 - 37,193,039 (+)NCBI
UU_Cfam_GSD_1.01337,666,368 - 37,669,857 (+)NCBI
LY6E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8143,017,982 - 143,023,832 (+)EnsemblGRCh38hg38GRCh38
GRCh388143,018,529 - 143,022,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378144,099,946 - 144,103,826 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,171,300 - 144,175,199 (+)NCBINCBI36hg18NCBI36
Build 348144,171,299 - 144,175,199NCBI
Celera8140,409,515 - 140,413,440 (+)NCBI
Cytogenetic Map8q24.3NCBI
HuRef8139,353,438 - 139,357,363 (+)NCBIHuRef
CHM1_18144,140,603 - 144,144,526 (+)NCBICHM1_1
Ly6e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,826,874 - 74,831,753 (+)NCBIGRCm39mm39
GRCm39 Ensembl1574,826,900 - 74,831,754 (+)Ensembl
GRCm381574,955,025 - 74,959,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,955,051 - 74,959,905 (+)EnsemblGRCm38mm10GRCm38
MGSCv371574,785,481 - 74,790,335 (+)NCBIGRCm37mm9NCBIm37
MGSCv361574,782,911 - 74,786,586 (+)NCBImm8
Celera1576,460,639 - 76,465,493 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.29NCBI
Ly6e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27106,935,530 - 106,939,689 (+)NCBI
Rnor_6.0 Ensembl7116,355,698 - 116,359,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07116,355,426 - 116,359,862 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07116,253,329 - 116,257,488 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,151,828 - 113,155,521 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7103,308,659 - 103,312,352 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ly6e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,453,118 - 1,455,165 (-)NCBI
SpeTri2.0NW_0049364708,879,217 - 8,880,777 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LY6E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.141,336,112 - 1,341,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LY6E
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,265,510 - 137,269,397 (+)NCBI
ChlSab1.1 Ensembl8137,265,535 - 137,269,404 (+)Ensembl
Vero_WHO_p1.0NW_0236660392,674,673 - 2,678,569 (-)NCBI
Ly6e
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473513,616,129 - 13,619,538 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 17 6 6 6 6 10 10 6
Low 5 5 6 2 4
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000001993   ⟹   ENSCAFP00000001841
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1336,926,798 - 36,929,305 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000068960   ⟹   ENSCAFP00000053440
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1336,925,980 - 36,929,745 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079351   ⟹   ENSCAFP00000060021
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1336,925,980 - 36,974,979 (+)Ensembl
RefSeq Acc Id: XM_003431808   ⟹   XP_003431856
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11336,926,776 - 36,930,265 (+)NCBI
Dog10K_Boxer_Tasha1336,879,527 - 36,883,015 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038429746   ⟹   XP_038285674
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1336,879,544 - 36,883,015 (+)NCBI
RefSeq Acc Id: XM_038493427   ⟹   XP_038349355
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11337,071,189 - 37,074,676 (+)NCBI
RefSeq Acc Id: XM_038493428   ⟹   XP_038349356
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11337,071,206 - 37,074,676 (+)NCBI
RefSeq Acc Id: XM_038555714   ⟹   XP_038411642
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01337,666,368 - 37,669,857 (+)NCBI
RefSeq Acc Id: XM_038555715   ⟹   XP_038411643
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01337,666,385 - 37,669,857 (+)NCBI
RefSeq Acc Id: XM_038619619   ⟹   XP_038475547
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01337,189,559 - 37,193,039 (+)NCBI
RefSeq Acc Id: XM_038619620   ⟹   XP_038475548
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01337,189,576 - 37,193,039 (+)NCBI
RefSeq Acc Id: XM_038685229   ⟹   XP_038541157
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01337,398,524 - 37,402,004 (+)NCBI
RefSeq Acc Id: XM_038685230   ⟹   XP_038541158
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01337,398,541 - 37,402,004 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003431856   ⟸   XM_003431808
- UniProtKB: F1PNC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000053440   ⟸   ENSCAFT00000068960
RefSeq Acc Id: ENSCAFP00000001841   ⟸   ENSCAFT00000001993
RefSeq Acc Id: ENSCAFP00000060021   ⟸   ENSCAFT00000079351
RefSeq Acc Id: XP_038349355   ⟸   XM_038493427
RefSeq Acc Id: XP_038349356   ⟸   XM_038493428
RefSeq Acc Id: XP_038475547   ⟸   XM_038619619
RefSeq Acc Id: XP_038475548   ⟸   XM_038619620
RefSeq Acc Id: XP_038541157   ⟸   XM_038685229
RefSeq Acc Id: XP_038541158   ⟸   XM_038685230
RefSeq Acc Id: XP_038285674   ⟸   XM_038429746
RefSeq Acc Id: XP_038411642   ⟸   XM_038555714
RefSeq Acc Id: XP_038411643   ⟸   XM_038555715
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001289 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000001841 UniProtKB/TrEMBL
  ENSCAFP00000053440 UniProtKB/TrEMBL
  ENSCAFP00000060021 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001993 UniProtKB/TrEMBL
  ENSCAFT00000068960 UniProtKB/TrEMBL
  ENSCAFT00000079351 UniProtKB/TrEMBL
InterPro LY6_UPA_recep-like UniProtKB/TrEMBL
NCBI Gene LY6E ENTREZGENE
Pfam UPAR_LY6 UniProtKB/TrEMBL
SMART SM00134 UniProtKB/TrEMBL
UniProt A0A5F4CGD7_CANLF UniProtKB/TrEMBL
  A0A5F4D021_CANLF UniProtKB/TrEMBL
  F1PNC6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42873 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 LY6E  lymphocyte antigen 6 family member E    lymphocyte antigen 6 complex, locus E  Symbol and/or name change 5135510 APPROVED