PDCD1 (programmed cell death 1) - Rat Genome Database

Name: PDCD1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PDCD1 (programmed cell death 1) Canis lupus familiaris

Analyze

Symbol:

PDCD1

Name:

programmed cell death 1

RGD ID:

12157317

Description:

INVOLVED IN B cell apoptotic process (ortholog); negative regulation of B cell apoptotic process (ortholog); negative regulation of tolerance induction (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); acute myocarditis (ortholog); anogenital venereal wart (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

PD-1; programmed cell death protein 1; programmed death 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDCD1 (programmed cell death 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pdcd1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pdcd1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdcd1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDCD1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdcd1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDCD1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDCD1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdcd1 (programmed cell death 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	51,606,559 - 51,618,903 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	51,608,173 - 51,618,723 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	51,830,362 - 51,840,346 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	51,809,256 - 51,820,132 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	51,809,263 - 51,823,016 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	51,659,966 - 51,669,894 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	51,399,146 - 51,409,148 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	51,676,302 - 51,686,322 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

acute myocarditis (ISO)

anogenital venereal wart (ISO)

anti-basement membrane glomerulonephritis (ISO)

asthma (ISO)

autoimmune hepatitis (ISO)

Bethlem Myopathy 1A (ISO)

Burns (ISO)

cervix uteri carcinoma in situ (ISO)

Chlamydia pneumonia (ISO)

chromosome 2q37 deletion syndrome (ISO)

Chronic Hepatitis B (ISO)

Colonic Neoplasms (ISO)

Colorectal Neoplasms (ISO)

cryptococcal meningitis (ISO)

cystitis (ISO)

Cytomegalovirus Infections (ISO)

D-2-hydroxyglutaric aciduria 1 (ISO)

dilated cardiomyopathy (ISO)

Experimental Autoimmune Encephalomyelitis (ISO)

Experimental Melanoma (ISO)

Fungemia (ISO)

genetic disease (ISO)

Graves' disease (ISO)

Helicobacter Infections (ISO)

Hepatic Echinococcosis (ISO)

hepatitis (ISO)

hepatitis A (ISO)

hepatitis B (ISO)

hepatitis C (ISO)

hepatocellular carcinoma (ISO)

hereditary spastic paraplegia 30 (ISO)

histoplasmosis (ISO)

human immunodeficiency virus infectious disease (ISO)

hydronephrosis (ISO)

intellectual disability (ISO)

Lung Neoplasms (ISO)

lupus nephritis (ISO)

lymphocytic choriomeningitis (ISO)

melanoma (ISO)

multiple sclerosis (ISO)

myocarditis (ISO)

periodontitis (ISO)

Pneumovirus Infections (ISO)

pre-eclampsia (ISO)

pulmonary tuberculosis (ISO)

Recurrent Respiratory Papillomatosis (ISO)

renal cell carcinoma (ISO)

respiratory syncytial virus infectious disease (ISO)

Schistosomiasis Japonica (ISO)

Sepsis (ISO)

Spinal Cord Injuries (ISO)

stomach cancer (ISO)

Streptococcus pneumonia (ISO)

systemic lupus erythematosus (ISO)

toxic shock syndrome (ISO)

Transplant Rejection (ISO)

triple-receptor negative breast cancer (ISO)

tuberculosis (ISO)

type 2 diabetes mellitus (ISO)

Viral Bronchiolitis (ISO)

viral encephalitis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell apoptotic process (ISO)

negative regulation of B cell apoptotic process (ISO)

negative regulation of immune response (IEA)

negative regulation of tolerance induction (ISO)

positive regulation of T cell apoptotic process (IEA,ISO)

regulation of immune response (IEA)

regulatory T cell apoptotic process (ISO)

Cellular Component

external side of plasma membrane (IEA)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:24154626	PMID:27016050	PMID:27107075	PMID:27276060	PMID:30032202	PMID:31733502

Genomics

Comparative Map Data

PDCD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	51,606,559 - 51,618,903 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	51,608,173 - 51,618,723 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	51,830,362 - 51,840,346 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	51,809,256 - 51,820,132 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	51,809,263 - 51,823,016 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	51,659,966 - 51,669,894 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	51,399,146 - 51,409,148 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	51,676,302 - 51,686,322 (-)	NCBI		UU_Cfam_GSD_1.0

PDCD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	241,849,884 - 241,858,894 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	241,849,884 - 241,858,894 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	242,792,036 - 242,801,046 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	242,440,711 - 242,449,731 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	236,456,683 - 236,465,707 (-)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	234,541,510 - 234,550,535 (-)	NCBI		HuRef
CHM1_1	2	242,797,131 - 242,806,156 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	242,351,431 - 242,360,440 (-)	NCBI		T2T-CHM13v2.0

Pdcd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	93,966,027 - 93,980,278 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	93,966,027 - 93,980,278 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	94,038,305 - 94,052,553 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	94,038,305 - 94,052,553 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	95,934,882 - 95,949,130 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	95,868,711 - 95,882,959 (-)	NCBI		MGSCv36	mm8
Celera	1	96,903,284 - 96,917,529 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	47.47	NCBI

Pdcd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	101,866,124 - 101,879,278 (-)	NCBI		GRCr8
mRatBN7.2	9	94,418,786 - 94,431,945 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	94,418,791 - 94,431,937 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	102,854,260 - 102,867,404 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	107,989,476 - 108,002,637 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	106,346,469 - 106,359,638 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	101,305,742 - 101,319,937 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	101,307,764 - 101,319,845 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	9	101,025,313 - 101,038,625 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	100,676,274 - 100,690,991 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	93,172,543 - 93,185,687 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	91,952,891 - 91,966,035 (-)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

Pdcd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955542	49,259 - 58,823 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955542	49,290 - 57,747 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDCD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	144,543,641 - 144,553,063 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	144,558,538 - 144,568,773 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	130,849,353 - 130,858,776 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

Pdcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	193,055,706 - 193,066,914 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936745	152,612 - 161,587 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936745	152,571 - 163,712 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDCD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	140,336,258 - 140,347,478 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	140,337,353 - 140,347,493 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDCD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	127,877,383 - 127,886,234 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	127,878,554 - 127,886,088 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	71,433,325 - 71,442,153 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdcd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	5,732,767 - 5,742,269 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624847	5,732,922 - 5,741,908 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PDCD1
217 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium
Low	4		15	6	6	6	2		9	8	6	2
Below cutoff	1	5	7				4	3	3		4	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001314097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022409577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038434570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB850882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB898677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000020931 ⟹ ENSCAFP00000019435

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	51,608,173 - 51,618,723 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845042917 ⟹ ENSCAFP00845033639

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	51,809,263 - 51,823,016 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845042972 ⟹ ENSCAFP00845033688

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	51,809,693 - 51,820,020 (-)	Ensembl

RefSeq Acc Id:

NM_001314097 ⟹ NP_001301026

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	51,608,987 - 51,618,715 (-)	NCBI
Dog10K_Boxer_Tasha	25	51,830,362 - 51,840,346 (-)	NCBI
ROS_Cfam_1.0	25	51,810,077 - 51,820,012 (-)	NCBI
UMICH_Zoey_3.1	25	51,659,966 - 51,669,894 (-)	NCBI
UNSW_CanFamBas_1.0	25	51,399,146 - 51,409,148 (-)	NCBI
UU_Cfam_GSD_1.0	25	51,676,302 - 51,686,322 (-)	NCBI

Sequence:

show sequence

GCGGGAGCCGCCGGGGGAGGCGAGCAGGCGGGCTGGCGCTCCGGGCATGGGGAGCCGGCGGGGG
CCCTGGCCGCTCGTCTGGGCCGTGCTGCAGCTGGGCTGGTGGCCAGGATGGCTCCTAGACTCCC
CTGACAGGCCCTGGAGCCCGCTCACCTTCTCCCCGGCGCAGCTCACGGTGCAGGAGGGAGAGAA
CGCCACGTTCACCTGCAGCCTGGCCGACATCCCCGACAGCTTCGTGCTCAACTGGTACCGCCTG
AGCCCCCGCAACCAGACGGACAAGCTGGCCGCCTTCCAGGAGGACCGCATCGAGCCGGGCCGGG
ACAGGCGCTTCCGCGTCACGCGGCTGCCCAACGGGCGGGACTTCCACATGAGCATCGTCGCTGC
GCGCCTCAACGACAGCGGCATCTACCTGTGCGGGGCCATCTACCTGCCCCCCAACACACAGATC
AACGAGAGTCCCCGCGCAGAGCTCTCCGTGACGGAGAGAACCCTGGAGCCCCCCACACAGAGCC
CCAGCCCCCCACCCAGACTCAGCGGCCAGTTGCAGGGGCTGGTCATCGGCGTCACGAGCGTGCT
GGTGGGTGTCCTGCTACTGCTGCTGCTGACCTGGGTCCTGGCCGCTGTCTTCCCCAGGGCCACC
CGAGGTGCCTGTGTGTGCGGGAGCGAGGACGAGCCTCTGAAGGAGGGCCCCGATGCAGCGCCCG
TCTTCACCCTGGACTACGGGGAGCTGGACTTCCAGTGGCGAGAGAAGACGCCGGAGCCCCCGGC
GCCCTGTGCCCCGGAGCAGACCGAGTATGCCACCATCGTCTTCCCGGGCAGGCCGGCGTCCCCG
GGCCGCAGGGCCTCGGCCAGCAGCCTGCAGGGAGCCCAGCCTCCGAGCCCCGAGGACGGACCCG
GCCTGTGGCCCCCCTGACCGGCCGCCTCCGCTGGCCCATGTCCTGC

hide sequence

RefSeq Acc Id:

XM_038434570 ⟹ XP_038290498

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	51,809,256 - 51,820,132 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001301026	(Get FASTA)	NCBI Sequence Viewer
	XP_038290498	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAO74171	(Get FASTA)	NCBI Sequence Viewer
	BAP46805	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000019435.3
	ENSCAFP00000071820.1
	ENSCAFP00030040482.1
	ENSCAFP00040040803.1
	ENSCAFP00845033639
	ENSCAFP00845033639.1
	ENSCAFP00845033688.1

RefSeq Acc Id:	NP_001301026 ⟸ NM_001314097
- Peptide Label:	precursor
- UniProtKB:	A0A090BAM7 (UniProtKB/TrEMBL), A0A8C0LM85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRRGPWPLVWAVLQLGWWPGWLLDSPDRPWSPLTFSPAQLTVQEGENATFTCSLADIPDSFV LNWYRLSPRNQTDKLAAFQEDRIEPGRDRRFRVTRLPNGRDFHMSIVAARLNDSGIYLCGAIYL PPNTQINESPRAELSVTERTLEPPTQSPSPPPRLSGQLQGLVIGVTSVLVGVLLLLLLTWVLAA VFPRATRGACVCGSEDEPLKEGPDAAPVFTLDYGELDFQWREKTPEPPAPCAPEQTEYATIVFP GRPASPGRRASASSLQGAQPPSPEDGPGLWPP hide sequence

RefSeq Acc Id:

ENSCAFP00000019435 ⟸ ENSCAFT00000020931

RefSeq Acc Id:	XP_038290498 ⟸ XM_038434570
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LM85 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845033639 ⟸ ENSCAFT00845042917

RefSeq Acc Id:

ENSCAFP00845033688 ⟸ ENSCAFT00845042972

Protein Domains

Ig-like

Promoters

RGD ID:

13687852

Promoter ID:

EPDNEW_C5920

Type:

single initiation site

Name:

PDCD1_1

Description:

programmed cell death 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	51,618,723 - 51,618,783	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013184	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030025103	UniProtKB/TrEMBL
	ENSCAFG00040025068	UniProtKB/TrEMBL
	ENSCAFG00845024308	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000020931.4	UniProtKB/TrEMBL
	ENSCAFT00000100023.1	UniProtKB/TrEMBL
	ENSCAFT00030046326.1	UniProtKB/TrEMBL
	ENSCAFT00040046745.1	UniProtKB/TrEMBL
	ENSCAFT00845042917	ENTREZGENE
	ENSCAFT00845042917.1	UniProtKB/TrEMBL
	ENSCAFT00845042972.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	PDCD1	UniProtKB/TrEMBL
KEGG Report	cfa:486213	UniProtKB/TrEMBL
NCBI Gene	PDCD1	ENTREZGENE
PANTHER	PROGRAMMED CELL DEATH PROTEIN 1	UniProtKB/TrEMBL
	PTHR15264	UniProtKB/TrEMBL
Pfam	V-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGv	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A090BAM7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0LM85	ENTREZGENE
	A0A8C0PFU6_CANLF	UniProtKB/TrEMBL
	A0A8I3PL99_CANLF	UniProtKB/TrEMBL
	A0A8I3PR61_CANLF	UniProtKB/TrEMBL
	A0A8P0PMR5_CANLF	UniProtKB/TrEMBL
	A0A8P0SHR3_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:44334	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM