LONP1 (lon peptidase 1, mitochondrial) - Rat Genome Database

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Gene: LONP1 (lon peptidase 1, mitochondrial) Canis lupus familiaris
Analyze
Symbol: LONP1
Name: lon peptidase 1, mitochondrial
RGD ID: 12157081
Description: ENCODES a protein that exhibits ATP-dependent peptidase activity (ortholog); insulin receptor substrate binding (ortholog); mitochondrial promoter sequence-specific DNA binding (ortholog); INVOLVED IN mitochondrion organization (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH brain ischemia (ortholog); cataract (ortholog); CODAS syndrome (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lon protease homolog, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,312,678 - 54,334,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,312,678 - 54,334,141 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,039,655 - 54,060,901 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,968,948 - 54,989,800 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,968,934 - 54,989,798 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,031,188 - 54,052,300 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,511,948 - 54,532,794 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,708,845 - 54,730,076 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:37756605  


Genomics

Comparative Map Data
LONP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,312,678 - 54,334,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,312,678 - 54,334,141 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,039,655 - 54,060,901 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,968,948 - 54,989,800 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,968,934 - 54,989,798 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,031,188 - 54,052,300 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,511,948 - 54,532,794 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,708,845 - 54,730,076 (+)NCBIUU_Cfam_GSD_1.0
LONP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,691,834 - 5,720,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,691,834 - 5,720,572 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,691,845 - 5,720,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,642,845 - 5,671,176 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,642,844 - 5,671,176NCBI
Celera195,629,216 - 5,657,543 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,452,614 - 5,480,959 (-)NCBIHuRef
CHM1_1195,691,454 - 5,720,076 (-)NCBICHM1_1
T2T-CHM13v2.0195,678,524 - 5,707,125 (-)NCBIT2T-CHM13v2.0
Lonp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,921,297 - 56,933,903 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,921,297 - 56,933,887 (-)EnsemblGRCm39 Ensembl
GRCm381756,614,297 - 56,626,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,614,297 - 56,626,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,753,720 - 56,766,326 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,299,420 - 56,312,007 (-)NCBIMGSCv36mm8
Celera1760,958,496 - 60,971,102 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.42NCBI
Lonp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,534,581 - 1,546,908 (-)NCBIGRCr8
mRatBN7.291,447,444 - 1,459,771 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,447,447 - 1,459,771 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,880,871 - 1,893,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,231,053 - 7,243,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,186,076 - 6,198,407 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,428,853 - 10,441,180 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,428,853 - 10,441,177 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,425,780 - 9,438,107 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,054,065 - 7,066,392 (+)NCBICelera
Cytogenetic Map9q11NCBI
Lonp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,712,199 - 3,731,301 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,712,173 - 3,729,556 (+)NCBIChiLan1.0ChiLan1.0
LONP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,088,400 - 10,115,046 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,314,584 - 9,341,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,709,062 - 4,735,653 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,644,525 - 5,670,956 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,644,525 - 5,670,956 (-)Ensemblpanpan1.1panPan2
Lonp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,547,848 - 214,569,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,265,512 - 3,287,181 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,265,344 - 3,287,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LONP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,266,258 - 73,286,773 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,266,310 - 73,286,774 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,788,290 - 73,808,755 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LONP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,348,968 - 5,371,521 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,346,426 - 5,371,507 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,731,120 - 2,753,980 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lonp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,494,813 - 4,516,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,494,786 - 4,516,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LONP1
366 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 4 6 6 6 12 5 10 6
Low 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000029820   ⟹   ENSCAFP00000027714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2054,312,678 - 54,334,141 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845022906   ⟹   ENSCAFP00845017958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2054,968,934 - 54,989,798 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845022947   ⟹   ENSCAFP00845017988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2054,968,948 - 54,989,798 (+)Ensembl
RefSeq Acc Id: XM_038428957   ⟹   XP_038284885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02054,968,948 - 54,989,800 (+)NCBI
RefSeq Acc Id: XM_038504591   ⟹   XP_038360519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12054,031,188 - 54,052,300 (+)NCBI
RefSeq Acc Id: XM_038567636   ⟹   XP_038423564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02054,708,845 - 54,730,076 (+)NCBI
RefSeq Acc Id: XM_038631790   ⟹   XP_038487718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02054,511,948 - 54,532,794 (+)NCBI
RefSeq Acc Id: XM_849298   ⟹   XP_854391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12054,312,678 - 54,334,142 (+)NCBI
Dog10K_Boxer_Tasha2054,039,655 - 54,060,901 (+)NCBI
Sequence:
RefSeq Acc Id: XP_854391   ⟸   XM_849298
- UniProtKB: A0A8P0SML3 (UniProtKB/TrEMBL),   A0A8C0P8W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000027714   ⟸   ENSCAFT00000029820
RefSeq Acc Id: XP_038360519   ⟸   XM_038504591
RefSeq Acc Id: XP_038487718   ⟸   XM_038631790
RefSeq Acc Id: XP_038284885   ⟸   XM_038428957
- UniProtKB: A0A8I3NN56 (UniProtKB/TrEMBL),   A0A8C0P8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423564   ⟸   XM_038567636
- UniProtKB: A0A8C0L373 (UniProtKB/TrEMBL),   A0A8C0P8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845017958   ⟸   ENSCAFT00845022906
RefSeq Acc Id: ENSCAFP00845017988   ⟸   ENSCAFT00845022947
Protein Domains
Lon N-terminal   Lon proteolytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018775 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022779 UniProtKB/TrEMBL
  ENSCAFG00845012796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029820.6 UniProtKB/TrEMBL
  ENSCAFT00030042086.1 UniProtKB/TrEMBL
  ENSCAFT00845022906 ENTREZGENE
  ENSCAFT00845022906.1 UniProtKB/TrEMBL
  ENSCAFT00845022947.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.5.5270 UniProtKB/TrEMBL
  1.20.58.1480 UniProtKB/TrEMBL
  2.30.130.40 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  Lon_bac/euk-typ UniProtKB/TrEMBL
  Lon_proteolytic UniProtKB/TrEMBL
  Lon_Prtase UniProtKB/TrEMBL
  Lon_prtase_N UniProtKB/TrEMBL
  Lon_prtase_N_sf UniProtKB/TrEMBL
  Lonm_euk UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Peptidase_S16_AS UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
NCBI Gene LONP1 ENTREZGENE
PANTHER LON PROTEASE HOMOLOG, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR43718 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  Lon_C UniProtKB/TrEMBL
  LON_substr_bdg UniProtKB/TrEMBL
PIRSF Lon_proteas UniProtKB/TrEMBL
PRINTS ENDOLAPTASE UniProtKB/TrEMBL
PROSITE LON_N UniProtKB/TrEMBL
  LON_PROTEOLYTIC UniProtKB/TrEMBL
  LON_SER UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  LON UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF88697 UniProtKB/TrEMBL
UniProt A0A8C0L373 ENTREZGENE
  A0A8C0P8W2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NK29_CANLF UniProtKB/TrEMBL
  A0A8I3NN56 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SML3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54321 ENTREZGENE