OR4K1 (olfactory receptor family 4 subfamily K member 1) - Rat Genome Database

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Gene: OR4K1 (olfactory receptor family 4 subfamily K member 1) Canis lupus familiaris
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Symbol: OR4K1
Name: olfactory receptor family 4 subfamily K member 1
RGD ID: 12155511
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC100687258; olfactory receptor 4K1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130426,952 - 427,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl30426,976 - 427,911 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha30474,844 - 475,779 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.030523,526 - 524,465 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.130473,510 - 474,445 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030568,670 - 569,605 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.030701,266 - 702,201 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
OR4K1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130426,952 - 427,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl30426,976 - 427,911 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha30474,844 - 475,779 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.030523,526 - 524,465 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.130473,510 - 474,445 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030568,670 - 569,605 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.030701,266 - 702,201 (+)NCBIUU_Cfam_GSD_1.0
OR4K1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381419,920,263 - 19,936,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1419,930,917 - 19,936,757 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,399,076 - 20,404,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,473,666 - 19,474,601 (+)NCBINCBI36Build 36hg18NCBI36
Build 341419,473,665 - 19,474,601NCBI
Celera14269,235 - 270,310 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14529,669 - 530,744 (+)NCBIHuRef
CHM1_11420,405,013 - 20,406,088 (+)NCBICHM1_1
T2T-CHM13v2.01414,119,705 - 14,136,196 (+)NCBIT2T-CHM13v2.0
Or4k1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,377,159 - 50,378,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,371,215 - 50,380,137 (-)EnsemblGRCm39 Ensembl
GRCm381450,139,702 - 50,140,637 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,133,758 - 50,142,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv371450,759,377 - 50,760,312 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,061,653 - 49,062,588 (-)NCBIMGSCv36mm8
Celera1446,370,918 - 46,371,853 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.97NCBI
Or4k1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,791,125 - 25,792,060 (-)NCBIGRCr8
mRatBN7.21523,311,545 - 23,312,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,307,622 - 23,314,555 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,088,816 - 26,089,751 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,050,136 - 27,051,071 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,297,366 - 25,298,301 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01526,923,731 - 26,924,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,923,731 - 26,924,665 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01530,851,103 - 30,852,037 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,543,230 - 26,544,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11526,558,929 - 26,559,865 (-)NCBI
Celera1523,663,205 - 23,664,140 (-)NCBICelera
Cytogenetic Map15p14NCBI
LOC100981375
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,440,526 - 21,446,370 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11420,657,016 - 20,662,860 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014810,828 - 811,891 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11418,875,474 - 18,876,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1418,875,527 - 18,876,462 (+)Ensemblpanpan1.1panPan2
LOC101971551
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,955,091 - 76,956,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366972,729,388 - 2,730,323 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366972,729,319 - 2,730,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110259162
(Sus scrofa - pig)
No map positions available.
LOC103231314
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12920,477,679 - 20,479,679 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2920,477,994 - 20,478,926 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605926,036,849 - 26,042,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR4K1
5 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00000079612   ⟹   ENSCAFP00000058596
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl30426,976 - 427,911 (+)Ensembl
RefSeq Acc Id: NM_001389078   ⟹   NP_001376007
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha30474,844 - 475,779 (+)NCBI
ROS_Cfam_1.030523,526 - 524,465 (+)NCBI
UMICH_Zoey_3.130473,510 - 474,445 (+)NCBI
UNSW_CanFamBas_1.030568,670 - 569,605 (+)NCBI
UU_Cfam_GSD_1.030701,266 - 702,201 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001376007 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000067222.1
  ENSCAFP00040037715.1
RefSeq Acc Id: ENSCAFP00000058596   ⟸   ENSCAFT00000079612
RefSeq Acc Id: NP_001376007   ⟸   NM_001389078
- UniProtKB: A0A8C0K9M1 (UniProtKB/TrEMBL),   A0A8C0TKN5 (UniProtKB/TrEMBL),   A0A8P0PFS5 (UniProtKB/TrEMBL)

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000047968 Ensembl
  ENSCAFG00000052324 UniProtKB/TrEMBL
  ENSCAFG00040023268 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000110022.1 UniProtKB/TrEMBL
  ENSCAFT00040043228.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100687258 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 4K1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0K9M1 ENTREZGENE
  A0A8C0TKN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PFS5 ENTREZGENE
UniProt Secondary A0A8P0PFS5 UniProtKB/TrEMBL
VGNC ID VGNC:84815 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-21 OR4K1  olfactory receptor family 4 subfamily K member 1  LOC100687258  olfactory receptor 4K1  Symbol and/or name change 5135510 APPROVED