LOC607889 (ubiquitin-conjugating enzyme E2 N-like) - Rat Genome Database

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Gene: LOC607889 (ubiquitin-conjugating enzyme E2 N-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC607889
Name: ubiquitin-conjugating enzyme E2 N-like
RGD ID: 12154372
Description: ENCODES a protein that exhibits ATP binding (inferred); nucleotide binding (inferred); transferase activity (inferred); INVOLVED IN postreplication repair (inferred); protein K63-linked ubiquitination (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1418,768,121 - 18,771,963 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha418,898,528 - 18,900,302 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0419,040,330 - 19,042,096 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1418,925,072 - 18,926,837 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0419,142,610 - 19,144,376 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0419,488,610 - 19,490,381 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC607889
27 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 4 3 12 2 5 2 4 3 9 6 8 4
Below cutoff 1 2 10 4 1 4 2 3 3 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: XM_003434540   ⟹   XP_003434588
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1418,768,121 - 18,771,963 (+)NCBI
Dog10K_Boxer_Tasha418,898,528 - 18,900,302 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038473032   ⟹   XP_038328960
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1418,925,072 - 18,926,837 (+)NCBI
RefSeq Acc Id: XM_038534075   ⟹   XP_038390003
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0419,488,610 - 19,490,381 (+)NCBI
RefSeq Acc Id: XM_038598395   ⟹   XP_038454323
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0419,142,610 - 19,144,376 (+)NCBI
RefSeq Acc Id: XM_038662699   ⟹   XP_038518627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0419,040,330 - 19,042,096 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003434588   ⟸   XM_003434540
- UniProtKB: A0A8P0NTC4 (UniProtKB/TrEMBL),   A0A8C0S2G6 (UniProtKB/TrEMBL),   A0A8P0NS87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038328960   ⟸   XM_038473032
RefSeq Acc Id: XP_038454323   ⟸   XM_038598395
RefSeq Acc Id: XP_038518627   ⟸   XM_038662699
- UniProtKB: A0A8C0PTA7 (UniProtKB/TrEMBL),   A0A8C0R8H2 (UniProtKB/TrEMBL),   A0A8I3MXS0 (UniProtKB/TrEMBL),   A0A8C0S2G6 (UniProtKB/TrEMBL),   A0A8P0NS87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390003   ⟸   XM_038534075
- UniProtKB: A0A8C0PTA7 (UniProtKB/TrEMBL),   A0A8C0R8H2 (UniProtKB/TrEMBL),   A0A8C0S2G6 (UniProtKB/TrEMBL),   A0A8I3MXS0 (UniProtKB/TrEMBL),   A0A8P0NS87 (UniProtKB/TrEMBL)
Protein Domains
UBC core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001747 UniProtKB/TrEMBL
  ENSCAFG00000024412 UniProtKB/TrEMBL
  ENSCAFG00030007245 UniProtKB/TrEMBL
  ENSCAFG00040002291 UniProtKB/TrEMBL
  ENSCAFG00040009275 UniProtKB/TrEMBL
  ENSCAFG00845000962 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002735.5 UniProtKB/TrEMBL
  ENSCAFT00000030148.5 UniProtKB/TrEMBL
  ENSCAFT00030013293.1 UniProtKB/TrEMBL
  ENSCAFT00040004347.1 UniProtKB/TrEMBL
  ENSCAFT00040017176.1 UniProtKB/TrEMBL
  ENSCAFT00845001773 ENTREZGENE
  ENSCAFT00845001773.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
InterPro UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
KEGG Report cfa:607889 UniProtKB/TrEMBL
NCBI Gene LOC607889 ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 N UniProtKB/TrEMBL
Pfam UQ_con UniProtKB/TrEMBL
PROSITE UBC_1 UniProtKB/TrEMBL
  UBC_2 UniProtKB/TrEMBL
SMART UBCc UniProtKB/TrEMBL
Superfamily-SCOP SSF54495 UniProtKB/TrEMBL
UniProt A0A8C0PTA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R8H2 ENTREZGENE
  A0A8C0S2G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MXS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NS87 ENTREZGENE
  A0A8P0NTC4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0NS87 UniProtKB/TrEMBL