TMEM38B (transmembrane protein 38B) - Rat Genome Database
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Gene: TMEM38B (transmembrane protein 38B) Canis lupus familiaris
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Symbol: TMEM38B
Name: transmembrane protein 38B
RGD ID: 12154167
Description: ENCODES a protein that exhibits cation channel activity (inferred); INVOLVED IN ossification (ortholog); release of sequestered calcium ion into cytosol (ortholog); release of sequestered calcium ion into cytosol by endoplasmic reticulum (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); osteogenesis imperfecta type 14 (ortholog); FOUND IN endoplasmic reticulum (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: trimeric intracellular cation channel type B; trimeric intracellular cation channel type B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1161,511,750 - 61,560,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11161,511,756 - 61,561,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TMEM38B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1161,511,750 - 61,560,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11161,511,756 - 61,561,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TMEM38B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9105,694,541 - 105,776,629 (+)EnsemblGRCh38hg38GRCh38
GRCh389105,694,541 - 105,776,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379108,456,806 - 108,538,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,496,646 - 107,577,265 (+)NCBINCBI36hg18NCBI36
Build 349105,536,379 - 105,616,999NCBI
Celera978,961,966 - 79,042,583 (+)NCBI
Cytogenetic Map9q31.2NCBI
HuRef978,058,333 - 78,140,432 (+)NCBIHuRef
CHM1_19108,603,836 - 108,685,928 (+)NCBICHM1_1
Tmem38b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,825,988 - 53,862,019 (+)NCBIGRCm39mm39
GRCm38453,825,988 - 53,862,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,826,045 - 53,862,019 (+)EnsemblGRCm38mm10GRCm38
MGSCv37453,838,917 - 53,874,890 (+)NCBIGRCm37mm9NCBIm37
MGSCv36453,847,162 - 53,881,691 (+)NCBImm8
Celera453,777,127 - 53,813,113 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.76NCBI
Tmem38b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0570,639,156 - 70,675,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl570,639,156 - 70,675,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0574,816,786 - 74,852,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4571,275,819 - 71,311,539 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1571,280,931 - 71,316,651 (+)NCBI
Celera567,353,639 - 67,389,331 (+)NCBICelera
Cytogenetic Map5q24NCBI
Tmem38b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541920,812,702 - 20,878,599 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541920,811,931 - 20,844,420 (-)NCBIChiLan1.0ChiLan1.0
TMEM38B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19104,980,839 - 105,128,988 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,980,935 - 105,128,988 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0976,854,177 - 76,938,334 (+)NCBIMhudiblu_PPA_v0panPan3
Tmem38b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365596,501,890 - 6,553,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM38B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,973,436 - 247,027,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,973,447 - 247,024,019 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,767,826 - 276,818,432 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM38B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11233,759,311 - 33,840,357 (-)NCBI
Tmem38b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247585,664,287 - 5,720,061 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 1 6 6 6 12 8 10 6
Low 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000038659   ⟹   ENSCAFP00000034403
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1161,511,750 - 61,560,556 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000049533   ⟹   ENSCAFP00000043172
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1161,519,976 - 61,560,556 (+)Ensembl
RefSeq Acc Id: XM_538776   ⟹   XP_538776
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11161,511,756 - 61,561,987 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_538776   ⟸   XM_538776
- Sequence:
RefSeq Acc Id: ENSCAFP00000043172   ⟸   ENSCAFT00000049533
RefSeq Acc Id: ENSCAFP00000034403   ⟸   ENSCAFT00000038659


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024981 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000034403 UniProtKB/TrEMBL
  ENSCAFP00000043172 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000038659 UniProtKB/TrEMBL
  ENSCAFT00000049533 UniProtKB/TrEMBL
InterPro TRIC_channel UniProtKB/TrEMBL
NCBI Gene TMEM38B ENTREZGENE
PANTHER PTHR12454 UniProtKB/TrEMBL
Pfam TRIC UniProtKB/TrEMBL
UniProt F1PN84_CANLF UniProtKB/TrEMBL
  J9PBJ2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47575 ENTREZGENE