FGF20 (fibroblast growth factor 20) - Rat Genome Database

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Gene: FGF20 (fibroblast growth factor 20) Canis lupus familiaris
Analyze
Symbol: FGF20
Name: fibroblast growth factor 20
RGD ID: 12152657
Description: ENCODES a protein that exhibits growth factor activity (ortholog); INVOLVED IN cell differentiation (ortholog); fibroblast growth factor receptor signaling pathway (ortholog); inner ear auditory receptor cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 53 (ortholog); late onset Parkinson's disease (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11640,330,793 - 40,339,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1640,331,307 - 40,339,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1640,828,018 - 40,838,484 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01642,383,443 - 42,393,916 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1642,385,213 - 42,394,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11640,477,114 - 40,487,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,020,341 - 41,030,808 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01641,213,558 - 41,224,028 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FGF20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11640,330,793 - 40,339,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1640,331,307 - 40,339,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1640,828,018 - 40,838,484 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01642,383,443 - 42,393,916 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1642,385,213 - 42,394,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11640,477,114 - 40,487,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,020,341 - 41,030,808 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01641,213,558 - 41,224,028 (-)NCBIUU_Cfam_GSD_1.0
FGF20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38816,992,181 - 17,002,345 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl816,992,181 - 17,002,345 (-)EnsemblGRCh38hg38GRCh38
GRCh37816,849,690 - 16,859,854 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36816,894,705 - 16,904,045 (-)NCBINCBI36Build 36hg18NCBI36
Build 34816,894,704 - 16,904,045NCBI
Celera815,816,530 - 15,825,865 (-)NCBICelera
Cytogenetic Map8p22NCBI
HuRef815,395,521 - 15,404,854 (-)NCBIHuRef
CHM1_1817,051,785 - 17,061,117 (-)NCBICHM1_1
T2T-CHM13v2.0817,260,031 - 17,270,196 (-)NCBIT2T-CHM13v2.0
Fgf20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39840,732,206 - 40,740,060 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl840,732,207 - 40,761,372 (-)EnsemblGRCm39 Ensembl
GRCm38840,279,166 - 40,286,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl840,279,166 - 40,308,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv37841,364,520 - 41,372,307 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36841,778,574 - 41,785,524 (-)NCBIMGSCv36mm8
Celera842,929,830 - 42,937,595 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Fgf20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81658,734,003 - 58,741,650 (+)NCBIGRCr8
mRatBN7.21652,030,549 - 52,038,201 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1652,010,194 - 52,038,204 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1657,345,032 - 57,351,777 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01660,749,898 - 60,756,652 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01655,978,981 - 55,985,730 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01655,152,748 - 55,159,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1655,152,748 - 55,159,352 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01654,855,241 - 54,861,845 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41655,386,987 - 55,393,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11655,387,061 - 55,393,819 (+)NCBI
Celera1649,920,516 - 49,927,267 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
Fgf20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955463528,651 - 536,927 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955463528,651 - 536,927 (+)NCBIChiLan1.0ChiLan1.0
FGF20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2735,452,704 - 35,463,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1811,187,326 - 11,197,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0816,205,791 - 16,216,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1813,151,867 - 13,161,216 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl813,151,867 - 13,161,216 (-)Ensemblpanpan1.1panPan2
Fgf20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494339,079,532 - 39,087,800 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365736,055,261 - 6,062,764 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365736,055,261 - 6,062,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl174,691,448 - 4,700,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1174,691,448 - 4,700,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,085,166 - 5,094,166 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGF20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1815,079,507 - 15,089,583 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl815,080,411 - 15,089,451 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605227,190,962 - 27,200,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476922,310,396 - 22,334,182 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476922,325,936 - 22,334,608 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FGF20
85 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 8 4 10 1 5
Below cutoff 1 3 13 5 2 5 1 2 6 5 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000011008   ⟹   ENSCAFP00000010203
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1640,331,307 - 40,339,616 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845025767   ⟹   ENSCAFP00845020304
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1642,385,213 - 42,394,487 (-)Ensembl
RefSeq Acc Id: XM_038452646   ⟹   XP_038308574
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1640,828,018 - 40,838,484 (-)NCBI
RefSeq Acc Id: XM_038498105   ⟹   XP_038354033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11640,477,114 - 40,487,581 (-)NCBI
RefSeq Acc Id: XM_038559235   ⟹   XP_038415163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01641,213,558 - 41,224,028 (-)NCBI
RefSeq Acc Id: XM_038623183   ⟹   XP_038479111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01641,020,341 - 41,030,808 (-)NCBI
RefSeq Acc Id: XM_038688922   ⟹   XP_038544850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01642,383,443 - 42,393,916 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000010203   ⟸   ENSCAFT00000011008
RefSeq Acc Id: XP_038354033   ⟸   XM_038498105
RefSeq Acc Id: XP_038479111   ⟸   XM_038623183
RefSeq Acc Id: XP_038544850   ⟸   XM_038688922
- UniProtKB: A0A8C0JGJ3 (UniProtKB/TrEMBL),   A0A8C0P6L5 (UniProtKB/TrEMBL),   A0A8I3NTD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308574   ⟸   XM_038452646
- UniProtKB: A0A8C0JGJ3 (UniProtKB/TrEMBL),   A0A8C0P6L5 (UniProtKB/TrEMBL),   A0A8I3NTD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415163   ⟸   XM_038559235
- UniProtKB: A0A8C0JGJ3 (UniProtKB/TrEMBL),   A0A8C0P6L5 (UniProtKB/TrEMBL),   A0A8I3NTD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845020304   ⟸   ENSCAFT00845025767


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006845 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021631 UniProtKB/TrEMBL
  ENSCAFG00040006332 UniProtKB/TrEMBL
  ENSCAFG00845014402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011008.4 UniProtKB/TrEMBL
  ENSCAFT00030039700.1 UniProtKB/TrEMBL
  ENSCAFT00040011797.1 UniProtKB/TrEMBL
  ENSCAFT00845025767 ENTREZGENE
  ENSCAFT00845025767.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
NCBI Gene FGF20 ENTREZGENE
PANTHER PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF72 UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
UniProt A0A8C0JGJ3 ENTREZGENE
  A0A8C0P6L5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NTD6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:51802 ENTREZGENE