HDGFL1 (HDGF like 1) - Rat Genome Database

Name: HDGFL1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: HDGFL1 (HDGF like 1) Canis lupus familiaris

Analyze

Symbol:

HDGFL1

Name:

HDGF like 1

RGD ID:

12151847

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hepatoma derived growth factor-like 1; hepatoma-derived growth factor-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HDGFL1 (HDGF like 1)	HGNC	NCBI
Mus musculus (house mouse):	Hdgfl1 (HDGF like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hdgfl1 (HDGF like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hdgfl1 (HDGF like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HDGFL1 (HDGF like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HDGFL1 (HDGF like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HDGFL1 (HDGF like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	20,914,875 - 20,915,677 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	20,871,267 - 20,872,051 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	21,024,208 - 21,026,228 (+)	NCBI		ROS_Cfam_1.0
UU_Cfam_GSD_1.0	35	22,311,979 - 22,313,997 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

HDGFL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	20,914,875 - 20,915,677 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	20,871,267 - 20,872,051 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	21,024,208 - 21,026,228 (+)	NCBI		ROS_Cfam_1.0
UU_Cfam_GSD_1.0	35	22,311,979 - 22,313,997 (+)	NCBI		UU_Cfam_GSD_1.0

HDGFL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	22,569,566 - 22,571,666 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	22,569,566 - 22,571,666 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	22,569,795 - 22,571,895 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	22,677,657 - 22,678,729 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	22,677,773 - 22,679,871	NCBI
Celera	6	23,803,036 - 23,804,108 (+)	NCBI		Celera
Cytogenetic Map	6	p22.3	NCBI
HuRef	6	22,512,779 - 22,513,851 (+)	NCBI		HuRef
CHM1_1	6	22,571,673 - 22,572,745 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	22,442,013 - 22,444,113 (+)	NCBI		T2T-CHM13v2.0

Hdgfl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	26,952,155 - 26,954,148 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	26,952,156 - 26,954,148 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	26,768,172 - 26,770,165 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	26,768,173 - 26,770,165 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	26,860,041 - 26,862,034 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	26,776,255 - 26,777,584 (-)	NCBI		MGSCv36	mm8
Celera	13	26,996,877 - 26,998,870 (-)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI

Hdgfl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	38,636,053 - 38,638,049 (+)	NCBI		GRCr8
mRatBN7.2	17	38,207,906 - 38,209,902 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	17	38,282,163 - 38,284,184 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	39,886,167 - 39,888,188 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	38,169,843 - 38,171,827 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	40,170,522 - 40,172,518 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	40,170,541 - 40,172,426 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	42,058,386 - 42,060,382 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	45,146,483 - 45,148,479 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	45,149,342 - 45,151,228 (+)	NCBI
Celera	17	37,888,905 - 37,890,901 (+)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

Hdgfl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955483	4,215,060 - 4,217,150 (-)	NCBI	ChiLan1.0	ChiLan1.0

HDGFL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	36,982,735 - 37,250,583 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	32,982,776 - 33,250,721 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	22,171,445 - 22,437,860 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	22,734,678 - 22,736,887 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	22,734,809 - 22,735,558 (+)	Ensembl	panpan1.1		panPan2

HDGFL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	17,690,873 - 17,697,764 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	18,656,664 - 18,658,638 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HDGFL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	49,654,556 - 49,828,227 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	49,655,854 - 49,656,624 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	22,509,310 - 22,512,082 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in HDGFL1
18 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022414521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038446182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038583963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_022414521 ⟹ XP_022270229

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	35	20,914,875 - 20,915,677 (+)	NCBI
Dog10K_Boxer_Tasha	35	20,871,267 - 20,872,051 (+)	NCBI

Sequence:

show sequence

TCGCCAGGGCCTCCGCCGGGGCCTCCACCGGGCCGGGGCCTCCACCGGGCCGGGGCCTCCGCCG
AGGCCGGGTGCGCAGCCTCGCCATGTCGCGGTGCTGCCGGCGCAAGTACGAGAGCGGCGACCTG
GTGTTCGCCAAGCTGAAGGGCTACGCCCACTGGCCGGCCCGGGTCTAGCACCTGGTCGAGCCCA
ACCGCTACCAGGTGTTCTTCTTCGGGACCCACGAGACGGCCTTCCTGGGCCCCAAGCACCTGTT
CCCCTACGAGGAGTCCAAGGAGAAGTTCGGCAAGCCCAGCAAGAGGAGGAGCTTCAGCGAGGGG
CTGTGGGAGATCGAGAACAACCCCTCGGTCCGGGCCGCCGCCGACCCGCCGGCCCCCCAGGAGC
AGCGAGGGGCGGCCAGCGCGGGCGCAGGGGCCGGGGAGGAGCAGCTGCAGCGGGAGGAGGAGCT
GCAGCGGGAGGAGCAGCAGCGGGAGGAGCAGCTGCAGCGGGAGGAGCAGCTGCAGCGGGAGGAG
GAGCTGCAGCGGGAGGAGCAGCTGCAGCGGGAGGAGCAGCTGCAGCGGGAGGAGGAGCAGCTGC
ATCGGGCCGAGCAGGCGCGGGCCAAGAGGAGCGCGGGGGAGCTGCCGGAGGGCGCCCCGAAACG
TCCCCGGGAGGCCGAGCCGGAGCGGGAGCCGCAGCCGCGGCCGCAGGAGCAGGAGCGGGAGCAG
GAGCCCCGGGGCGCCGCGGCCCAGCAGGCCCCCGAGGGCGCCGAGCAGCAGCAGCAGCAGCAGC
AGCGGCGGGGAGAGCGCGACAGCCCCAGCCCGTAG

hide sequence

RefSeq Acc Id:

XM_038446182 ⟹ XP_038302110

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	35	21,024,208 - 21,026,228 (+)	NCBI

RefSeq Acc Id:

XM_038583963 ⟹ XP_038439891

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	35	22,311,979 - 22,313,997 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_022270229	(Get FASTA)	NCBI Sequence Viewer
	XP_038302110	(Get FASTA)	NCBI Sequence Viewer
	XP_038439891	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_022270229 ⟸ XM_022414521

- Sequence:

show sequence

MSRCCRRKYESGDLVFAKLKGYAHWPARVXHLVEPNRYQVFFFGTHETAFLGPKHLFPYEESKE
KFGKPSKRRSFSEGLWEIENNPSVRAAADPPAPQEQRGAASAGAGAGEEQLQREEELQREEQQR
EEQLQREEQLQREEELQREEQLQREEQLQREEEQLHRAEQARAKRSAGELPEGAPKRPREAEPE
REPQPRPQEQEREQEPRGAAAQQAPEGAEQQQQQQQRRGERDSPSP

hide sequence

RefSeq Acc Id:

XP_038302110 ⟸ XM_038446182

RefSeq Acc Id:

XP_038439891 ⟸ XM_038583963

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	HDGFL1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-08	HDGFL1	HDGF like 1		hepatoma derived growth factor-like 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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