NPY (neuropeptide Y) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NPY (neuropeptide Y) Canis lupus familiaris
Analyze
Symbol: NPY
Name: neuropeptide Y
RGD ID: 12151720
Description: ENCODES a protein that exhibits neuropeptide Y receptor binding (ortholog); INVOLVED IN adult feeding behavior (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); chemical synaptic transmission (ortholog); PARTICIPATES IN neuropeptide Y metabolic pathway; ASSOCIATED WITH AIDS Dementia Complex (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN extracellular space (ortholog); GABA-ergic synapse (ortholog); neuronal dense core vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pro-neuropeptide Y
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11437,824,579 - 37,831,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1437,823,861 - 37,831,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1437,373,133 - 37,380,851 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01437,758,052 - 37,765,788 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1437,758,938 - 37,765,943 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11437,872,113 - 37,879,841 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01437,564,477 - 37,572,202 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01437,908,665 - 37,916,390 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NPY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11437,824,579 - 37,831,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1437,823,861 - 37,831,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1437,373,133 - 37,380,851 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01437,758,052 - 37,765,788 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1437,758,938 - 37,765,943 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11437,872,113 - 37,879,841 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01437,564,477 - 37,572,202 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01437,908,665 - 37,916,390 (+)NCBIUU_Cfam_GSD_1.0
NPY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38724,284,190 - 24,291,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl724,284,188 - 24,291,862 (+)EnsemblGRCh38hg38GRCh38
GRCh37724,323,809 - 24,331,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36724,290,334 - 24,298,002 (+)NCBINCBI36Build 36hg18NCBI36
Build 34724,097,048 - 24,104,717NCBI
Celera724,312,617 - 24,320,302 (+)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef724,208,802 - 24,216,490 (+)NCBIHuRef
CHM1_1724,325,406 - 24,333,092 (+)NCBICHM1_1
T2T-CHM13v2.0724,422,184 - 24,429,876 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2724,375,683 - 24,383,371 (+)NCBI
Npy
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39649,799,690 - 49,806,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl649,799,690 - 49,806,487 (+)EnsemblGRCm39 Ensembl
GRCm38649,822,710 - 49,829,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl649,822,710 - 49,829,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv37649,772,728 - 49,779,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36649,752,315 - 49,759,093 (+)NCBIMGSCv36mm8
Celera650,334,213 - 50,340,981 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map624.04NCBI
Npy
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8480,212,111 - 80,219,310 (+)NCBIGRCr8
mRatBN7.2478,881,294 - 78,888,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl478,881,264 - 78,888,495 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx484,098,422 - 84,105,619 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0479,873,911 - 79,881,112 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0478,314,242 - 78,321,437 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0479,557,856 - 79,565,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl479,573,998 - 79,581,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl479,557,854 - 79,565,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04144,233,753 - 144,240,956 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,038,013 - 78,045,187 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1478,314,142 - 78,321,317 (+)NCBI
Celera473,795,148 - 73,802,371 (+)NCBICelera
RH 3.4 Map4508.6RGD
RH 3.4 Map4507.8RGD
Cytogenetic Map4q24NCBI
Npy
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541026,348,504 - 26,355,297 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541026,348,388 - 26,355,232 (+)NCBIChiLan1.0ChiLan1.0
NPY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2629,145,106 - 29,152,854 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1777,469,833 - 77,477,581 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0724,963,056 - 24,970,803 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1724,566,963 - 24,574,657 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl724,568,041 - 24,574,657 (+)Ensemblpanpan1.1panPan2
Npy
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511882,077,623 - 82,085,085 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364781,290,505 - 1,296,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364781,289,437 - 1,296,819 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1847,985,725 - 47,992,667 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11847,985,796 - 47,993,726 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21852,929,745 - 52,937,666 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12134,068,533 - 34,076,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2134,068,530 - 34,075,127 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604270,564,869 - 70,572,551 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npy
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247396,277,612 - 6,285,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247396,277,704 - 6,285,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NPY
81 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
4 4 5 22 20 12 4 5 4 5 25 17 12 14 8

Sequence


Ensembl Acc Id: ENSCAFT00000004474   ⟹   ENSCAFP00000004135
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1437,823,861 - 37,831,443 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845017687   ⟹   ENSCAFP00845013771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1437,758,938 - 37,765,943 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845017714   ⟹   ENSCAFP00845013795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1437,758,938 - 37,765,795 (+)Ensembl
RefSeq Acc Id: XM_038442248   ⟹   XP_038298176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1437,373,133 - 37,380,851 (+)NCBI
RefSeq Acc Id: XM_038495293   ⟹   XP_038351221
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11437,872,113 - 37,879,841 (+)NCBI
RefSeq Acc Id: XM_038556388   ⟹   XP_038412316
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01437,908,665 - 37,916,390 (+)NCBI
RefSeq Acc Id: XM_038620313   ⟹   XP_038476241
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01437,564,477 - 37,572,202 (+)NCBI
RefSeq Acc Id: XM_038685991   ⟹   XP_038541919
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01437,758,052 - 37,765,788 (+)NCBI
Ensembl Acc Id: ENSCAFP00000004135   ⟸   ENSCAFT00000004474
RefSeq Acc Id: XP_038351221   ⟸   XM_038495293
RefSeq Acc Id: XP_038476241   ⟸   XM_038620313
RefSeq Acc Id: XP_038541919   ⟸   XM_038685991
- UniProtKB: A0A8C0QL77 (UniProtKB/TrEMBL),   A0A8I3NDG0 (UniProtKB/TrEMBL),   A0A8C0ME83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298176   ⟸   XM_038442248
- UniProtKB: A0A8C0QL77 (UniProtKB/TrEMBL),   A0A8I3NDG0 (UniProtKB/TrEMBL),   A0A8C0ME83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412316   ⟸   XM_038556388
- UniProtKB: A0A8C0ME83 (UniProtKB/TrEMBL),   A0A8C0QL77 (UniProtKB/TrEMBL),   A0A8I3NDG0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845013795   ⟸   ENSCAFT00845017714
Ensembl Acc Id: ENSCAFP00845013771   ⟸   ENSCAFT00845017687


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002801 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004493 UniProtKB/TrEMBL
  ENSCAFG00040007873 UniProtKB/TrEMBL
  ENSCAFG00845010065 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004474.5 UniProtKB/TrEMBL
  ENSCAFT00000094321.1 UniProtKB/TrEMBL
  ENSCAFT00030008251.1 UniProtKB/TrEMBL
  ENSCAFT00040014645.1 UniProtKB/TrEMBL
  ENSCAFT00845017687 ENTREZGENE
  ENSCAFT00845017687.1 UniProtKB/TrEMBL
  ENSCAFT00845017714.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.900 UniProtKB/TrEMBL
InterPro Pancreatic_hormone-like UniProtKB/TrEMBL
  Pancreatic_hormone-like_CS UniProtKB/TrEMBL
NCBI Gene NPY ENTREZGENE
PANTHER PRO-NEUROPEPTIDE Y UniProtKB/TrEMBL
  PTHR10533 UniProtKB/TrEMBL
Pfam Hormone_3 UniProtKB/TrEMBL
PRINTS PANCHORMONE UniProtKB/TrEMBL
PROSITE PANCREATIC_HORMONE_1 UniProtKB/TrEMBL
  PANCREATIC_HORMONE_2 UniProtKB/TrEMBL
SMART PAH UniProtKB/TrEMBL
UniProt A0A8C0ME83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QL77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NDG0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NQ26_CANLF UniProtKB/TrEMBL
  A0A8P0TS77_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43936 ENTREZGENE