FANCE (FA complementation group E) - Rat Genome Database

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Gene: FANCE (FA complementation group E) Canis lupus familiaris
Analyze
Symbol: FANCE
Name: FA complementation group E
RGD ID: 12148963
Description: INVOLVED IN interstrand cross-link repair (inferred); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); breast cancer (ortholog); colon carcinoma (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fanconi anemia complementation group E
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,587,053 - 4,600,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,587,041 - 4,600,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,602,678 - 4,616,472 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,924,900 - 4,938,771 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,924,723 - 4,938,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,585,816 - 4,599,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,664,495 - 4,678,347 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,764,698 - 4,778,520 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FANCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,587,053 - 4,600,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,587,041 - 4,600,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,602,678 - 4,616,472 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,924,900 - 4,938,771 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,924,723 - 4,938,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,585,816 - 4,599,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,664,495 - 4,678,347 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,764,698 - 4,778,520 (+)NCBIUU_Cfam_GSD_1.0
FANCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,452,338 - 35,467,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,452,338 - 35,467,104 (+)EnsemblGRCh38hg38GRCh38
GRCh37635,420,115 - 35,434,879 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,528,116 - 35,542,859 (+)NCBINCBI36Build 36hg18NCBI36
Build 34635,528,115 - 35,542,859NCBI
Celera636,974,117 - 36,988,860 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,140,912 - 35,155,635 (+)NCBIHuRef
CHM1_1635,422,162 - 35,436,892 (+)NCBICHM1_1
T2T-CHM13v2.0635,275,414 - 35,290,178 (+)NCBIT2T-CHM13v2.0
Fance
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,532,504 - 28,545,548 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,532,493 - 28,545,546 (+)EnsemblGRCm39 Ensembl
GRCm381728,313,530 - 28,326,574 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,313,519 - 28,326,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv371728,450,475 - 28,463,519 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,040,969 - 28,054,161 (+)NCBIMGSCv36mm8
Celera1728,867,357 - 28,880,396 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.65NCBI
Fance
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,371,153 - 6,388,366 (+)NCBIGRCr8
mRatBN7.2206,369,416 - 6,386,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,375,573 - 6,386,631 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,082,166 - 7,099,278 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,443,996 - 6,461,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,923,494 - 6,940,584 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,888,927 - 7,906,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,895,083 - 7,906,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02010,089,291 - 10,106,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,549,701 - 6,566,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera207,925,780 - 7,943,019 (+)NCBICelera
Cytogenetic Map20p12NCBI
Fance
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554373,369,042 - 3,382,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554373,369,127 - 3,382,072 (+)NCBIChiLan1.0ChiLan1.0
FANCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,917,947 - 49,932,888 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,785,919 - 45,800,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,012,076 - 35,027,018 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,105,759 - 36,120,795 (+)NCBIpanpan1.1PanPan1.1panPan2
Fance
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,165,402 - 40,177,074 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,782,977 - 23,794,708 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,783,161 - 23,794,646 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,659,266 - 36,671,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604435,365,240 - 35,377,238 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fance
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,993,271 - 22,000,398 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,992,023 - 22,000,309 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FANCE
113 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 21 5 6 5 6 11 10 6
Low 5 1 1 1 6 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003639408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022425965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002631803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005333906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005367605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005401996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005435385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005435386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005435387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005435388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000002036   ⟹   ENSCAFP00000001884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl124,587,041 - 4,600,405 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077678   ⟹   ENSCAFP00000064416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl124,587,041 - 4,600,405 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081259   ⟹   ENSCAFP00000064329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl124,587,041 - 4,600,405 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000084208   ⟹   ENSCAFP00000060946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl124,587,041 - 4,600,277 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845011185   ⟹   ENSCAFP00845008724
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl124,924,723 - 4,938,600 (+)Ensembl
RefSeq Acc Id: XM_003639408   ⟹   XP_003639456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1124,587,053 - 4,600,944 (+)NCBI
Dog10K_Boxer_Tasha124,602,678 - 4,616,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022425965   ⟹   XP_022281673
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1124,589,250 - 4,600,943 (+)NCBI
Dog10K_Boxer_Tasha124,604,762 - 4,616,468 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038491611   ⟹   XP_038347539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,585,816 - 4,599,551 (+)NCBI
RefSeq Acc Id: XM_038491612   ⟹   XP_038347540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,587,855 - 4,599,549 (+)NCBI
RefSeq Acc Id: XM_038553833   ⟹   XP_038409761
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,764,698 - 4,778,518 (+)NCBI
RefSeq Acc Id: XM_038553834   ⟹   XP_038409762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,766,844 - 4,778,516 (+)NCBI
RefSeq Acc Id: XM_038617691   ⟹   XP_038473619
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,664,495 - 4,678,345 (+)NCBI
RefSeq Acc Id: XM_038617692   ⟹   XP_038473620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,666,646 - 4,678,343 (+)NCBI
RefSeq Acc Id: XM_038683296   ⟹   XP_038539224
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,924,903 - 4,938,768 (+)NCBI
RefSeq Acc Id: XM_038683297   ⟹   XP_038539225
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,924,901 - 4,938,771 (+)NCBI
RefSeq Acc Id: XM_038683298   ⟹   XP_038539226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,927,053 - 4,938,766 (+)NCBI
RefSeq Acc Id: XR_002631803
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1124,587,053 - 4,600,946 (+)NCBI
Dog10K_Boxer_Tasha124,602,678 - 4,616,472 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005333906
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,585,816 - 4,599,553 (+)NCBI
RefSeq Acc Id: XR_005367605
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,764,698 - 4,778,520 (+)NCBI
RefSeq Acc Id: XR_005401996
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,664,495 - 4,678,347 (+)NCBI
RefSeq Acc Id: XR_005435385
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,924,903 - 4,938,770 (+)NCBI
RefSeq Acc Id: XR_005435386
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,924,900 - 4,936,207 (+)NCBI
RefSeq Acc Id: XR_005435387
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,924,900 - 4,937,985 (+)NCBI
RefSeq Acc Id: XR_005435388
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,924,900 - 4,936,164 (+)NCBI
RefSeq Acc Id: XP_003639456   ⟸   XM_003639408
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SSM9 (UniProtKB/TrEMBL),   A0A8I3RT75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022281673   ⟸   XM_022425965
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000060946   ⟸   ENSCAFT00000084208
RefSeq Acc Id: ENSCAFP00000064416   ⟸   ENSCAFT00000077678
RefSeq Acc Id: ENSCAFP00000001884   ⟸   ENSCAFT00000002036
RefSeq Acc Id: ENSCAFP00000064329   ⟸   ENSCAFT00000081259
RefSeq Acc Id: XP_038347539   ⟸   XM_038491611
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038347540   ⟸   XM_038491612
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038473619   ⟸   XM_038617691
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038473620   ⟸   XM_038617692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038539225   ⟸   XM_038683297
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SVD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539224   ⟸   XM_038683296
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SSM9 (UniProtKB/TrEMBL),   A0A8I3RT75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539226   ⟸   XM_038683298
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038409761   ⟸   XM_038553833
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SSM9 (UniProtKB/TrEMBL),   A0A8I3RT75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409762   ⟸   XM_038553834
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845008724   ⟸   ENSCAFT00845011185
Promoters
RGD ID:13685397
Promoter ID:EPDNEW_C3464
Type:initiation region
Name:FANCE_1
Description:Fanconi anemia complementation group E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1124,587,087 - 4,587,147EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001313 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040016002 UniProtKB/TrEMBL
  ENSCAFG00845006312 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002036.4 UniProtKB/TrEMBL
  ENSCAFT00040029464.1 UniProtKB/TrEMBL
  ENSCAFT00040029554.1 UniProtKB/TrEMBL
  ENSCAFT00845011185 ENTREZGENE
  ENSCAFT00845011185.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.480 UniProtKB/TrEMBL
InterPro FANCE UniProtKB/TrEMBL
  Fanconi_anaemia_gr_E_prot_C UniProtKB/TrEMBL
NCBI Gene FANCE ENTREZGENE
PANTHER FANCONI ANEMIA GROUP E PROTEIN UniProtKB/TrEMBL
  PTHR32094 UniProtKB/TrEMBL
Pfam FA_FANCE UniProtKB/TrEMBL
UniProt A0A8C0SSM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SVD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RT75 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40720 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 FANCE  FA complementation group E    Fanconi anemia complementation group E  Symbol and/or name change 5135510 APPROVED