DNALI1 (dynein axonemal light intermediate chain 1) - Rat Genome Database

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Gene: DNALI1 (dynein axonemal light intermediate chain 1) Canis lupus familiaris
Analyze
Symbol: DNALI1
Name: dynein axonemal light intermediate chain 1
RGD ID: 12148525
Description: ENCODES a protein that exhibits dynein heavy chain binding (inferred); INVOLVED IN sperm flagellum assembly (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); Spermatogenic Failure 83 (ortholog); FOUND IN ciliary base (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: axonemal dynein light intermediate polypeptide 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,916,747 - 4,922,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,916,756 - 4,922,813 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,163,676 - 5,169,819 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,050,890 - 5,057,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,050,899 - 5,057,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,910,078 - 4,916,219 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,976,437 - 4,982,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,993,129 - 4,999,271 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DNALI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,916,747 - 4,922,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,916,756 - 4,922,813 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,163,676 - 5,169,819 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,050,890 - 5,057,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,050,899 - 5,057,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,910,078 - 4,916,219 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,976,437 - 4,982,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,993,129 - 4,999,271 (-)NCBIUU_Cfam_GSD_1.0
DNALI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,556,940 - 37,566,857 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,556,919 - 37,566,857 (+)EnsemblGRCh38hg38GRCh38
GRCh37138,022,541 - 38,032,458 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,795,107 - 37,805,045 (+)NCBINCBI36Build 36hg18NCBI36
Build 34137,691,612 - 37,701,550NCBI
Celera136,300,508 - 36,310,446 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,139,366 - 36,149,953 (+)NCBIHuRef
CHM1_1138,138,699 - 38,148,637 (+)NCBICHM1_1
T2T-CHM13v2.0137,421,691 - 37,431,608 (+)NCBIT2T-CHM13v2.0
Dnali1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,949,131 - 124,959,443 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,949,131 - 124,959,496 (-)EnsemblGRCm39 Ensembl
GRCm384125,055,339 - 125,065,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4125,055,338 - 125,065,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv374124,732,583 - 124,742,901 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,557,643 - 124,567,961 (-)NCBIMGSCv36mm8
Celera4123,376,730 - 123,386,900 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.99NCBI
Dnali1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,603,132 - 142,611,970 (-)NCBIGRCr8
mRatBN7.25137,318,475 - 137,327,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,318,477 - 137,327,336 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5140,022,611 - 140,031,455 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,792,629 - 141,801,473 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,799,795 - 141,808,639 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05143,053,365 - 143,062,203 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5143,053,367 - 143,062,226 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,821,949 - 146,830,787 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,399,182 - 144,408,020 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15144,410,295 - 144,418,035 (-)NCBI
Celera5135,836,681 - 135,845,519 (-)NCBICelera
Cytogenetic Map5q36NCBI
Dnali1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,367,443 - 15,377,105 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,367,443 - 15,375,001 (+)NCBIChiLan1.0ChiLan1.0
DNALI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,272,339 - 189,282,309 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,401,393 - 188,411,362 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,829,963 - 36,839,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,179,381 - 38,189,313 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,179,381 - 38,189,378 (+)Ensemblpanpan1.1panPan2
Dnali1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,954,876 - 53,963,030 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,779,671 - 19,787,093 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,779,731 - 19,787,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNALI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,612,941 - 93,621,484 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,612,263 - 93,621,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNALI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,301,879 - 95,312,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,299,311 - 95,312,651 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,499,202 - 21,509,694 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnali1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,294,072 - 20,303,380 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,294,637 - 20,303,384 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DNALI1
76 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 1 1 7 4 1
Below cutoff 5 5 21 6 6 6 5 5 5 6 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000005283   ⟹   ENSCAFP00000004888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl154,916,756 - 4,922,813 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000093652   ⟹   ENSCAFP00000043556
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl154,916,756 - 4,922,469 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845054455   ⟹   ENSCAFP00845042800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl155,050,899 - 5,057,041 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845054477   ⟹   ENSCAFP00845042819
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl155,051,904 - 5,057,041 (-)Ensembl
RefSeq Acc Id: XM_038451839   ⟹   XP_038307767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha155,163,676 - 5,169,803 (-)NCBI
RefSeq Acc Id: XM_038495504   ⟹   XP_038351432
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1154,910,078 - 4,916,219 (-)NCBI
RefSeq Acc Id: XM_038495505   ⟹   XP_038351433
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1154,910,078 - 4,916,203 (-)NCBI
RefSeq Acc Id: XM_038557855   ⟹   XP_038413783
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0154,993,129 - 4,999,271 (-)NCBI
RefSeq Acc Id: XM_038557856   ⟹   XP_038413784
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0154,993,129 - 4,999,255 (-)NCBI
RefSeq Acc Id: XM_038621727   ⟹   XP_038477655
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0154,976,437 - 4,982,578 (-)NCBI
RefSeq Acc Id: XM_038621728   ⟹   XP_038477656
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0154,976,437 - 4,982,562 (-)NCBI
RefSeq Acc Id: XM_038687500   ⟹   XP_038543428
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0155,050,890 - 5,057,040 (-)NCBI
RefSeq Acc Id: XM_038687501   ⟹   XP_038543429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0155,050,890 - 5,057,024 (-)NCBI
RefSeq Acc Id: XM_539590   ⟹   XP_539590
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1154,916,747 - 4,922,893 (-)NCBI
Dog10K_Boxer_Tasha155,163,676 - 5,169,819 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_539590   ⟸   XM_539590
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K6Y0 (UniProtKB/TrEMBL),   A0A8I3QP67 (UniProtKB/TrEMBL),   A0A8P0N685 (UniProtKB/TrEMBL),   A0A8C0NQF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000004888   ⟸   ENSCAFT00000005283
RefSeq Acc Id: ENSCAFP00000043556   ⟸   ENSCAFT00000093652
RefSeq Acc Id: XP_038351432   ⟸   XM_038495504
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038351433   ⟸   XM_038495505
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038477655   ⟸   XM_038621727
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038477656   ⟸   XM_038621728
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038543428   ⟸   XM_038687500
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K6Y0 (UniProtKB/TrEMBL),   A0A8I3QP67 (UniProtKB/TrEMBL),   A0A8P0N685 (UniProtKB/TrEMBL),   A0A8C0NQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038543429   ⟸   XM_038687501
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038307767   ⟸   XM_038451839
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413783   ⟸   XM_038557855
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K6Y0 (UniProtKB/TrEMBL),   A0A8C0NQF4 (UniProtKB/TrEMBL),   A0A8I3QP67 (UniProtKB/TrEMBL),   A0A8P0N685 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413784   ⟸   XM_038557856
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042819   ⟸   ENSCAFT00845054477
RefSeq Acc Id: ENSCAFP00845042800   ⟸   ENSCAFT00845054455


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003298 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016847 UniProtKB/TrEMBL
  ENSCAFG00040005663 UniProtKB/TrEMBL
  ENSCAFG00845030680 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005283.5 UniProtKB/TrEMBL
  ENSCAFT00000093652.2 UniProtKB/TrEMBL
  ENSCAFT00030031172.1 UniProtKB/TrEMBL
  ENSCAFT00030031201.1 UniProtKB/TrEMBL
  ENSCAFT00040010651.1 UniProtKB/TrEMBL
  ENSCAFT00845054455 ENTREZGENE
  ENSCAFT00845054455.1 UniProtKB/TrEMBL
  ENSCAFT00845054477.1 UniProtKB/TrEMBL
InterPro Axonemal_dynein_light_chain UniProtKB/TrEMBL
NCBI Gene DNALI1 ENTREZGENE
PANTHER AXONEMAL DYNEIN LIGHT INTERMEDIATE POLYPEPTIDE 1 UniProtKB/TrEMBL
  PTHR13183 UniProtKB/TrEMBL
Pfam Ax_dynein_light UniProtKB/TrEMBL
UniProt A0A8C0K6Y0 ENTREZGENE
  A0A8C0NQF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NQH1_CANLF UniProtKB/TrEMBL
  A0A8I3QB93_CANLF UniProtKB/TrEMBL
  A0A8I3QP67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N685 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SWW9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54297 ENTREZGENE