NCCRP1 (NCCRP1, F-box associated domain containing) - Rat Genome Database
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Gene: NCCRP1 (NCCRP1, F-box associated domain containing) Canis lupus familiaris
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Symbol: NCCRP1
Name: NCCRP1, F-box associated domain containing
RGD ID: 12148023
Description: INVOLVED IN positive regulation of cell population proliferation (inferred); protein ubiquitination (inferred); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: F-box only protein 50; non-specific cytotoxic cell receptor protein 1 homolog; non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,989,951 - 113,993,847 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,990,024 - 113,993,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,391,401 - 113,396,384 (-)NCBI
ROS_Cfam_1.01114,589,361 - 114,594,343 (-)NCBI
UMICH_Zoey_3.11114,147,467 - 114,151,134 (-)NCBI
UNSW_CanFamBas_1.01113,780,582 - 113,785,548 (-)NCBI
UU_Cfam_GSD_1.01114,775,712 - 114,779,385 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
NCCRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,989,951 - 113,993,847 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,990,024 - 113,993,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,391,401 - 113,396,384 (-)NCBI
ROS_Cfam_1.01114,589,361 - 114,594,343 (-)NCBI
UMICH_Zoey_3.11114,147,467 - 114,151,134 (-)NCBI
UNSW_CanFamBas_1.01113,780,582 - 113,785,548 (-)NCBI
UU_Cfam_GSD_1.01114,775,712 - 114,779,385 (-)NCBI
NCCRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1939,196,964 - 39,201,884 (+)EnsemblGRCh38hg38GRCh38
GRCh381939,196,964 - 39,201,884 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371939,687,604 - 39,692,524 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,379,444 - 44,384,362 (+)NCBINCBI36hg18NCBI36
Celera1936,491,191 - 36,496,097 (+)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1936,134,453 - 36,139,359 (+)NCBIHuRef
CHM1_11939,688,414 - 39,693,332 (+)NCBICHM1_1
Nccrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,243,017 - 28,247,168 (-)NCBIGRCm39mm39
GRCm39 Ensembl728,243,021 - 28,246,679 (-)Ensembl
GRCm38728,543,592 - 28,547,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,543,596 - 28,547,254 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,328,615 - 29,332,273 (-)NCBIGRCm37mm9NCBIm37
MGSCv36728,252,356 - 28,256,014 (-)NCBImm8
Celera723,108,697 - 23,112,355 (-)NCBICelera
Cytogenetic Map7A3NCBI
Nccrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2183,835,083 - 83,838,620 (-)NCBI
Rnor_6.0 Ensembl185,213,652 - 85,217,258 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0185,213,578 - 85,218,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0185,558,420 - 85,559,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0186,428,109 - 86,432,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0186,767,843 - 86,768,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,654,277 - 83,657,968 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1183,732,910 - 83,735,887 (-)NCBI
Celera178,228,998 - 78,233,365 (-)NCBICelera
Cytogenetic Map1q21NCBI
Nccrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468353,824 - 356,503 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468353,066 - 356,650 (-)NCBIChiLan1.0ChiLan1.0
NCCRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11944,844,060 - 44,849,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,844,711 - 44,848,796 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01936,295,765 - 36,300,893 (+)NCBIMhudiblu_PPA_v0panPan3
Nccrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,629,595 - 13,632,450 (+)NCBI
SpeTri2.0NW_0049366612,057,664 - 2,060,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCCRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,926,785 - 47,929,954 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,925,879 - 47,929,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,341,669 - 43,345,771 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCCRP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,786,642 - 33,791,701 (+)NCBI
ChlSab1.1 Ensembl633,786,800 - 33,790,581 (+)Ensembl
Nccrp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479412,514,223 - 12,517,666 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 3 4 3 3 3 3
Below cutoff 2 5 18 3 3 3 5 12 8 7 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000009006   ⟹   ENSCAFP00000008356
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1113,990,024 - 113,993,837 (-)Ensembl
RefSeq Acc Id: XM_038468847   ⟹   XP_038324775
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,147,467 - 114,151,134 (-)NCBI
RefSeq Acc Id: XM_038528934   ⟹   XP_038384862
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01114,775,712 - 114,779,385 (-)NCBI
RefSeq Acc Id: XM_038593212   ⟹   XP_038449140
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01113,780,582 - 113,785,548 (-)NCBI
RefSeq Acc Id: XM_038657034   ⟹   XP_038512962
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,589,361 - 114,594,343 (-)NCBI
RefSeq Acc Id: XM_850276   ⟹   XP_855369
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11113,989,951 - 113,993,847 (-)NCBI
Dog10K_Boxer_Tasha1113,391,401 - 113,396,384 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038324775 (Get FASTA)   NCBI Sequence Viewer  
  XP_038384862 (Get FASTA)   NCBI Sequence Viewer  
  XP_038449140 (Get FASTA)   NCBI Sequence Viewer  
  XP_038512962 (Get FASTA)   NCBI Sequence Viewer  
  XP_855369 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_855369   ⟸   XM_850276
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000008356   ⟸   ENSCAFT00000009006
RefSeq Acc Id: XP_038324775   ⟸   XM_038468847
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038449140   ⟸   XM_038593212
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038512962   ⟸   XM_038657034
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038384862   ⟸   XM_038528934
- Peptide Label: isoform X1
Protein Domains
FBA

Promoters
RGD ID:13682315
Promoter ID:EPDNEW_C383
Type:single initiation site
Name:NCCRP1_1
Description:non-specific cytotoxic cell receptor protein 1 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11113,993,807 - 113,993,867EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005593 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000008356 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009006 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.260 UniProtKB/TrEMBL
InterPro F-box-assoc_dom UniProtKB/TrEMBL
  F-box_only UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
KEGG Report cfa:612546 UniProtKB/TrEMBL
NCBI Gene NCCRP1 ENTREZGENE
PANTHER PTHR12125 UniProtKB/TrEMBL
Pfam FBA UniProtKB/TrEMBL
PROSITE FBA UniProtKB/TrEMBL
SMART FBA UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
UniProt F1PWB7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:81243 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 NCCRP1  NCCRP1, F-box associated domain containing  NCCRP1  non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)  Symbol and/or name change 5135510 APPROVED