PROM1 (prominin 1) - Rat Genome Database

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Gene: PROM1 (prominin 1) Canis lupus familiaris
Analyze
Symbol: PROM1
Name: prominin 1
RGD ID: 12147891
Description: ENCODES a protein that exhibits actinin binding (ortholog); cadherin binding (ortholog); INVOLVED IN camera-type eye photoreceptor cell differentiation (ortholog); glomerular parietal epithelial cell differentiation (ortholog); glomerular visceral epithelial cell differentiation (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); cone-rod dystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); cell projection (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: prominin 1.s1; prominin-1; prominin-1.s2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,229,487 - 64,362,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,260,685 - 64,382,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,778,870 - 66,880,110 (+)NCBI
ROS_Cfam_1.0364,707,547 - 64,840,616 (+)NCBI
UMICH_Zoey_3.1364,228,808 - 64,330,214 (+)NCBI
UNSW_CanFamBas_1.0364,432,846 - 64,534,046 (+)NCBI
UU_Cfam_GSD_1.0364,793,321 - 64,894,543 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22772571  


Genomics

Comparative Map Data
PROM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,229,487 - 64,362,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,260,685 - 64,382,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,778,870 - 66,880,110 (+)NCBI
ROS_Cfam_1.0364,707,547 - 64,840,616 (+)NCBI
UMICH_Zoey_3.1364,228,808 - 64,330,214 (+)NCBI
UNSW_CanFamBas_1.0364,432,846 - 64,534,046 (+)NCBI
UU_Cfam_GSD_1.0364,793,321 - 64,894,543 (+)NCBI
PROM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl415,963,076 - 16,084,378 (-)EnsemblGRCh38hg38GRCh38
GRCh38415,968,226 - 16,084,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37415,969,851 - 16,085,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,578,955 - 15,686,664 (-)NCBINCBI36hg18NCBI36
Build 34415,646,125 - 15,753,835NCBI
Celera416,434,397 - 16,550,164 (-)NCBI
Cytogenetic Map4p15.32NCBI
HuRef415,319,438 - 15,435,190 (-)NCBIHuRef
CHM1_1415,967,639 - 16,083,574 (-)NCBICHM1_1
Prom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,150,963 - 44,260,850 (-)NCBIGRCm39mm39
GRCm39 Ensembl544,150,962 - 44,259,374 (-)Ensembl
GRCm38543,993,621 - 44,102,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,993,620 - 44,102,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,384,861 - 44,492,975 (-)NCBIGRCm37mm9NCBIm37
MGSCv36544,281,870 - 44,389,929 (-)NCBImm8
Celera541,422,565 - 41,530,564 (-)NCBICelera
Cytogenetic Map5B3NCBI
Prom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21466,989,545 - 67,094,534 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)Ensembl
Rnor_6.01471,532,321 - 71,637,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,533,063 - 71,637,417 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,573,130 - 71,668,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,122,986 - 72,230,453 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11472,125,409 - 72,232,843 (+)NCBI
Celera1465,949,815 - 66,052,606 (+)NCBICelera
Cytogenetic Map14q21NCBI
Prom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,955,501 - 8,059,537 (+)NCBIChiLan1.0ChiLan1.0
PROM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1415,702,155 - 15,816,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,702,159 - 15,815,454 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0410,405,299 - 10,519,518 (-)NCBIMhudiblu_PPA_v0panPan3
Prom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,176,590 - 58,315,536 (+)NCBI
SpeTri2.0NW_00493647711,878,261 - 12,017,228 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,215,659 - 11,317,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,215,659 - 11,331,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,866,626 - 10,987,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,093,699 - 34,243,630 (+)NCBI
ChlSab1.1 Ensembl2734,129,532 - 34,243,778 (+)Ensembl
Vero_WHO_p1.0NW_02366604780,860,464 - 80,977,347 (+)NCBI
Prom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475515,765,162 - 15,886,023 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 7 4 8 1
Low 1 5 9 6 6 6 8 9 6
Below cutoff 6 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001314109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ654317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR758755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000024229   ⟹   ENSCAFP00000022493
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,260,685 - 64,361,994 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000044445   ⟹   ENSCAFP00000038815
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,260,702 - 64,361,983 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063654   ⟹   ENSCAFP00000062276
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,260,685 - 64,382,009 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077089   ⟹   ENSCAFP00000052621
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,260,685 - 64,361,994 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000088418   ⟹   ENSCAFP00000051426
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,260,685 - 64,361,611 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089711   ⟹   ENSCAFP00000057206
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl364,260,685 - 64,377,249 (+)Ensembl
RefSeq Acc Id: NM_001314109   ⟹   NP_001301038
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1364,260,702 - 64,361,983 (+)NCBI
Dog10K_Boxer_Tasha366,778,870 - 66,880,110 (+)NCBI
ROS_Cfam_1.0364,738,830 - 64,840,253 (+)NCBI
UMICH_Zoey_3.1364,228,808 - 64,330,214 (+)NCBI
UNSW_CanFamBas_1.0364,432,846 - 64,534,046 (+)NCBI
UU_Cfam_GSD_1.0364,793,321 - 64,894,543 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038660481   ⟹   XP_038516409
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,592 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660482   ⟹   XP_038516410
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,547 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660483   ⟹   XP_038516411
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,592 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660484   ⟹   XP_038516412
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,732,597 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660485   ⟹   XP_038516413
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,732,972 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660486   ⟹   XP_038516414
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,732,033 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660487   ⟹   XP_038516415
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,594 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660488   ⟹   XP_038516416
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,593 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660489   ⟹   XP_038516417
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,596 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660490   ⟹   XP_038516418
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,590 - 64,840,616 (+)NCBI
RefSeq Acc Id: XM_038660491   ⟹   XP_038516419
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0364,707,593 - 64,840,616 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001301038   ⟸   NM_001314109
- Peptide Label: precursor
- UniProtKB: A0A059WHJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000051426   ⟸   ENSCAFT00000088418
RefSeq Acc Id: ENSCAFP00000052621   ⟸   ENSCAFT00000077089
RefSeq Acc Id: ENSCAFP00000022493   ⟸   ENSCAFT00000024229
RefSeq Acc Id: ENSCAFP00000062276   ⟸   ENSCAFT00000063654
RefSeq Acc Id: ENSCAFP00000038815   ⟸   ENSCAFT00000044445
RefSeq Acc Id: ENSCAFP00000057206   ⟸   ENSCAFT00000089711
RefSeq Acc Id: XP_038516410   ⟸   XM_038660482
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516418   ⟸   XM_038660490
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038516409   ⟸   XM_038660481
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516411   ⟸   XM_038660483
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516416   ⟸   XM_038660488
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038516419   ⟸   XM_038660491
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038516415   ⟸   XM_038660487
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038516417   ⟸   XM_038660489
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038516414   ⟸   XM_038660486
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516412   ⟸   XM_038660484
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516413   ⟸   XM_038660485
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015233 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000038815 ENTREZGENE
Ensembl Transcript ENSCAFT00000044445 ENTREZGENE
NCBI Gene PROM1 ENTREZGENE
UniProt A0A059WHJ1 ENTREZGENE
VGNC ID VGNC:45012 ENTREZGENE