LHCGR (luteinizing hormone/choriogonadotropin receptor) - Rat Genome Database

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Gene: LHCGR (luteinizing hormone/choriogonadotropin receptor) Canis lupus familiaris
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Symbol: LHCGR
Name: luteinizing hormone/choriogonadotropin receptor
RGD ID: 12147669
Description: ENCODES a protein that exhibits ATPase binding (ortholog); G protein-coupled peptide receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN activation of adenylate cyclase activity (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); arachidonic acid secretion (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphas family; luteinizing hormone signaling pathway; peptide and protein hormone signaling pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); Anorchia (ortholog); breast cancer (ortholog); FOUND IN endosome (ortholog); extracellular space (ortholog); receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LHR; luteinizing hormone receptor; lutropin-choriogonadotropic hormone receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11050,540,706 - 50,594,336 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1050,541,960 - 50,598,036 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1050,394,259 - 50,456,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01051,416,899 - 51,479,209 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1051,417,733 - 51,474,628 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11051,119,798 - 51,182,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01051,404,008 - 51,466,313 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01051,595,139 - 51,657,483 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14731239   PMID:16715322   PMID:17276503   PMID:18023320   PMID:19007557   PMID:22301074   PMID:22541321   PMID:30032202  


Genomics

Comparative Map Data
LHCGR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11050,540,706 - 50,594,336 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1050,541,960 - 50,598,036 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1050,394,259 - 50,456,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01051,416,899 - 51,479,209 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1051,417,733 - 51,474,628 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11051,119,798 - 51,182,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01051,404,008 - 51,466,313 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01051,595,139 - 51,657,483 (-)NCBIUU_Cfam_GSD_1.0
LHCGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38248,686,774 - 48,755,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl248,686,774 - 48,755,730 (-)EnsemblGRCh38hg38GRCh38
GRCh37248,913,913 - 48,982,863 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36248,767,417 - 48,836,367 (-)NCBINCBI36Build 36hg18NCBI36
Build 34248,825,619 - 48,894,468NCBI
Celera248,754,221 - 48,823,183 (-)NCBICelera
Cytogenetic Map2p16.3NCBI
HuRef248,647,284 - 48,716,442 (-)NCBIHuRef
CHM1_1248,844,653 - 48,913,614 (-)NCBICHM1_1
T2T-CHM13v2.0248,682,806 - 48,751,772 (-)NCBIT2T-CHM13v2.0
Lhcgr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391789,023,812 - 89,099,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1789,023,909 - 89,099,418 (-)EnsemblGRCm39 Ensembl
GRCm381788,716,384 - 88,792,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1788,716,481 - 88,791,990 (-)EnsemblGRCm38mm10GRCm38
MGSCv371789,140,889 - 89,191,316 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361788,649,875 - 88,700,302 (-)NCBIMGSCv36mm8
Celera1793,149,952 - 93,199,996 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1758.35NCBI
Lhcgr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8611,415,361 - 11,480,834 (+)NCBIGRCr8
mRatBN7.265,661,871 - 5,728,109 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl65,661,871 - 5,724,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx65,950,334 - 6,013,310 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.066,259,709 - 6,322,689 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.065,786,872 - 5,849,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0612,493,182 - 12,554,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl612,493,943 - 12,554,439 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0622,455,216 - 22,516,430 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4612,613,622 - 12,651,587 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1612,613,621 - 12,651,587 (-)NCBI
Celera65,442,191 - 5,504,330 (+)NCBICelera
Cytogenetic Map6q12NCBI
Lhcgr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544115,207,252 - 15,242,914 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544115,205,883 - 15,263,617 (-)NCBIChiLan1.0ChiLan1.0
LHCGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21277,625,492 - 77,695,724 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A77,629,460 - 77,699,692 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A48,808,822 - 48,879,021 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A49,728,994 - 49,798,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A49,729,002 - 49,798,780 (-)Ensemblpanpan1.1panPan2
Lhcgr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629232,499,857 - 32,557,352 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365083,928,466 - 3,983,890 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365083,928,467 - 3,983,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHCGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl391,964,415 - 92,021,398 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1391,964,415 - 92,023,821 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2397,929,099 - 97,949,675 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap3q22-q23NCBI
LHCGR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11458,413,334 - 58,479,124 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1458,413,993 - 58,477,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604553,365,608 - 53,428,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lhcgr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473829,903,571 - 29,966,915 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473829,902,364 - 29,967,384 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LHCGR
430 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 3 9 1
Below cutoff 2 2 13 3 6 3 4 3 7 5 3

Sequence


RefSeq Acc Id: ENSCAFT00000004255   ⟹   ENSCAFP00000003939
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1050,541,960 - 50,598,036 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000036195   ⟹   ENSCAFP00000031546
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1050,541,960 - 50,598,036 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000078137   ⟹   ENSCAFP00000064278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1050,541,960 - 50,593,503 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011265   ⟹   ENSCAFP00845008787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1051,417,733 - 51,474,628 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011320   ⟹   ENSCAFP00845008836
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1051,417,733 - 51,474,628 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011379   ⟹   ENSCAFP00845008888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1051,417,733 - 51,474,181 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011399   ⟹   ENSCAFP00845008905
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1051,418,162 - 51,474,181 (-)Ensembl
RefSeq Acc Id: XM_038489594   ⟹   XP_038345522
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11051,119,798 - 51,182,164 (-)NCBI
RefSeq Acc Id: XM_038551583   ⟹   XP_038407511
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01051,595,139 - 51,657,483 (-)NCBI
RefSeq Acc Id: XM_038613528   ⟹   XP_038469456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01051,404,008 - 51,466,313 (-)NCBI
RefSeq Acc Id: XM_038641021   ⟹   XP_038496949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1050,394,259 - 50,456,607 (-)NCBI
RefSeq Acc Id: XM_038678894   ⟹   XP_038534822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01051,416,899 - 51,479,209 (-)NCBI
RefSeq Acc Id: ENSCAFP00000003939   ⟸   ENSCAFT00000004255
RefSeq Acc Id: ENSCAFP00000064278   ⟸   ENSCAFT00000078137
RefSeq Acc Id: ENSCAFP00000031546   ⟸   ENSCAFT00000036195
RefSeq Acc Id: XP_038345522   ⟸   XM_038489594
RefSeq Acc Id: XP_038469456   ⟸   XM_038613528
RefSeq Acc Id: XP_038534822   ⟸   XM_038678894
- UniProtKB: A0A8I3MS18 (UniProtKB/TrEMBL),   A0A8P0TFT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038496949   ⟸   XM_038641021
- UniProtKB: A0A8I3MS18 (UniProtKB/TrEMBL),   A0A8P0TFT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407511   ⟸   XM_038551583
- UniProtKB: A0A8I3MS18 (UniProtKB/TrEMBL),   A0A8P0TFT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845008836   ⟸   ENSCAFT00845011320
RefSeq Acc Id: ENSCAFP00845008905   ⟸   ENSCAFT00845011399
RefSeq Acc Id: ENSCAFP00845008888   ⟸   ENSCAFT00845011379
RefSeq Acc Id: ENSCAFP00845008787   ⟸   ENSCAFT00845011265

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002695 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007884 UniProtKB/TrEMBL
  ENSCAFG00040013365 UniProtKB/TrEMBL
  ENSCAFG00845006174 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004255.6 UniProtKB/TrEMBL
  ENSCAFT00000036195.4 UniProtKB/TrEMBL
  ENSCAFT00000078137.2 UniProtKB/TrEMBL
  ENSCAFT00000102345.1 UniProtKB/TrEMBL
  ENSCAFT00030015036.1 UniProtKB/TrEMBL
  ENSCAFT00030015089.1 UniProtKB/TrEMBL
  ENSCAFT00040025288.1 UniProtKB/TrEMBL
  ENSCAFT00040025305.1 UniProtKB/TrEMBL
  ENSCAFT00845011265.1 UniProtKB/TrEMBL
  ENSCAFT00845011320.1 UniProtKB/TrEMBL
  ENSCAFT00845011379 ENTREZGENE
  ENSCAFT00845011379.1 UniProtKB/TrEMBL
  ENSCAFT00845011399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Gphrmn_rcpt_fam UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LSH_rcpt UniProtKB/TrEMBL
NCBI Gene LHCGR ENTREZGENE
PANTHER GLYCOPROTEIN HORMONE RECEPTOR UniProtKB/TrEMBL
  LUTROPIN-CHORIOGONADOTROPIC HORMONE RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
PRINTS GLYCHORMONER UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
  LSHRECEPTOR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
UniProt A0A8C0RFA1_CANLF UniProtKB/TrEMBL
  A0A8C0RFF7_CANLF UniProtKB/TrEMBL
  A0A8C0SI75_CANLF UniProtKB/TrEMBL
  A0A8C0SI84_CANLF UniProtKB/TrEMBL
  A0A8I3MS18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MUW2_CANLF UniProtKB/TrEMBL
  A0A8I3MZN7_CANLF UniProtKB/TrEMBL
  A0A8I3RUR3_CANLF UniProtKB/TrEMBL
  A0A8P0PFQ4_CANLF UniProtKB/TrEMBL
  A0A8P0TFT0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54524 ENTREZGENE