SRP72 (signal recognition particle 72) - Rat Genome Database

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Gene: SRP72 (signal recognition particle 72) Canis lupus familiaris
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Symbol: SRP72
Name: signal recognition particle 72
RGD ID: 12147329
Description: ENCODES a protein that exhibits signal recognition particle binding (inferred); TPR domain binding (inferred); ASSOCIATED WITH Bone Marrow Failure Syndrome 1 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN endoplasmic reticulum (ortholog); signal recognition particle (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: signal recognition particle 72 kDa protein; signal recognition particle subunit SRP72; signal recognition particle,72 kDa subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,688,295 - 48,717,826 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,688,295 - 48,717,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,578,763 - 48,608,289 (+)NCBI
ROS_Cfam_1.01349,302,508 - 49,332,068 (+)NCBI
UMICH_Zoey_3.11348,974,564 - 49,004,098 (+)NCBI
UNSW_CanFamBas_1.01348,503,375 - 48,532,917 (+)NCBI
UU_Cfam_GSD_1.01349,449,469 - 49,479,000 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8388879   PMID:9857079  


Genomics

Comparative Map Data
SRP72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,688,295 - 48,717,826 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,688,295 - 48,717,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,578,763 - 48,608,289 (+)NCBI
ROS_Cfam_1.01349,302,508 - 49,332,068 (+)NCBI
UMICH_Zoey_3.11348,974,564 - 49,004,098 (+)NCBI
UNSW_CanFamBas_1.01348,503,375 - 48,532,917 (+)NCBI
UU_Cfam_GSD_1.01349,449,469 - 49,479,000 (+)NCBI
SRP72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl456,467,617 - 56,503,681 (+)EnsemblGRCh38hg38GRCh38
GRCh38456,467,617 - 56,503,681 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37457,333,783 - 57,369,847 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36457,028,519 - 57,064,604 (+)NCBINCBI36hg18NCBI36
Build 34457,174,717 - 57,210,775NCBI
Celera454,840,136 - 54,876,261 (+)NCBI
Cytogenetic Map4q12NCBI
HuRef453,287,903 - 53,323,943 (+)NCBIHuRef
CHM1_1457,368,898 - 57,404,983 (+)NCBICHM1_1
Srp72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39577,122,548 - 77,147,782 (+)NCBIGRCm39mm39
GRCm39 Ensembl577,122,530 - 77,147,784 (+)Ensembl
GRCm38576,974,701 - 76,999,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,974,683 - 76,999,937 (+)EnsemblGRCm38mm10GRCm38
MGSCv37577,403,726 - 77,428,960 (+)NCBIGRCm37mm9NCBIm37
MGSCv36578,049,475 - 78,074,709 (+)NCBImm8
Celera574,242,566 - 74,267,829 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
Srp72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21431,168,175 - 31,195,717 (-)NCBImRatBN7.2
Rnor_6.01433,447,583 - 33,453,788 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01433,325,108 - 33,351,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,462,627 - 33,489,312 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1430,481,417 - 30,508,939 (-)NCBICelera
Cytogenetic Map14p11NCBI
Srp72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544714,519,064 - 14,552,758 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544714,519,978 - 14,552,758 (-)NCBIChiLan1.0ChiLan1.0
SRP72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1473,989,304 - 74,025,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl473,989,304 - 74,025,906 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0467,420,551 - 67,456,065 (-)NCBIMhudiblu_PPA_v0panPan3
Srp72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,576,494 - 27,611,170 (-)NCBI
SpeTri2.0NW_00493648218,687,088 - 18,721,734 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,729,116 - 55,762,020 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1855,729,202 - 55,762,298 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2857,788,069 - 57,820,984 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP72
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,127,817 - 12,162,992 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl712,126,607 - 12,162,951 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606612,801,516 - 12,838,175 (-)NCBIVero_WHO_p1.0
Srp72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476112,917,855 - 12,949,423 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 21 5 6 5 6 1 12 8 10 6
Low 1 1 1 1 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000003524   ⟹   ENSCAFP00000003266
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1348,688,295 - 48,717,824 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000062479   ⟹   ENSCAFP00000057106
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1348,688,295 - 48,695,271 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000062565   ⟹   ENSCAFP00000065792
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1348,688,295 - 48,717,824 (+)Ensembl
RefSeq Acc Id: NM_001003264   ⟹   NP_001003264
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11348,688,295 - 48,717,826 (+)NCBI
Dog10K_Boxer_Tasha1348,578,763 - 48,608,289 (+)NCBI
ROS_Cfam_1.01349,302,508 - 49,332,068 (+)NCBI
UMICH_Zoey_3.11348,974,564 - 49,004,098 (+)NCBI
UNSW_CanFamBas_1.01348,503,375 - 48,532,917 (+)NCBI
UU_Cfam_GSD_1.01349,449,469 - 49,479,000 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003264 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA48014 (Get FASTA)   NCBI Sequence Viewer  
  P33731 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003264   ⟸   NM_001003264
- UniProtKB: P33731 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSCAFP00000003266   ⟸   ENSCAFT00000003524
RefSeq Acc Id: ENSCAFP00000065792   ⟸   ENSCAFT00000062565
RefSeq Acc Id: ENSCAFP00000057106   ⟸   ENSCAFT00000062479

Promoters
RGD ID:13685658
Promoter ID:EPDNEW_C3728
Type:initiation region
Name:SRP72_1
Description:signal recognition particle 72
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11348,688,311 - 48,688,371EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002244 Ensembl
NCBI Gene SRP72 ENTREZGENE
UniProt P33731 ENTREZGENE
VGNC ID VGNC:46809 ENTREZGENE