ANKRD40 (ankyrin repeat domain 40) - Rat Genome Database

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Gene: ANKRD40 (ankyrin repeat domain 40) Canis lupus familiaris
Analyze
Symbol: ANKRD40
Name: ankyrin repeat domain 40
RGD ID: 12146028
Description: ASSOCIATED WITH genetic disease (ortholog); trichodontoosseous syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,597,596 - 26,610,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,599,762 - 26,605,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,990,159 - 26,002,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,391,890 - 27,404,661 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,391,901 - 27,404,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1926,159,313 - 26,171,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,418,069 - 26,430,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,548,375 - 26,561,146 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ANKRD40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,597,596 - 26,610,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,599,762 - 26,605,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,990,159 - 26,002,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,391,890 - 27,404,661 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,391,901 - 27,404,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1926,159,313 - 26,171,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,418,069 - 26,430,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,548,375 - 26,561,146 (-)NCBIUU_Cfam_GSD_1.0
ANKRD40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,693,198 - 50,707,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,693,198 - 50,707,914 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,770,559 - 48,785,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361746,127,682 - 46,140,262 (-)NCBINCBI36Build 36hg18NCBI36
Celera1745,231,886 - 45,246,618 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1744,137,961 - 44,152,694 (-)NCBIHuRef
CHM1_11748,834,537 - 48,849,263 (-)NCBICHM1_1
T2T-CHM13v2.01751,560,394 - 51,575,123 (-)NCBIT2T-CHM13v2.0
Ankrd40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,218,827 - 94,232,673 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,218,827 - 94,232,667 (+)EnsemblGRCm39 Ensembl
GRCm381194,328,001 - 94,341,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,328,001 - 94,341,841 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,189,315 - 94,203,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,144,239 - 94,156,013 (+)NCBIMGSCv36mm8
Celera11103,946,715 - 103,960,619 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
Ankrd40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,778,966 - 79,792,212 (+)NCBIGRCr8
mRatBN7.21079,282,075 - 79,295,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,282,075 - 79,295,320 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,887,128 - 83,900,518 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,385,249 - 83,398,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,899,551 - 78,912,940 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,032,656 - 82,045,937 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,032,656 - 82,045,935 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,865,469 - 81,878,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41082,977,241 - 82,985,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1078,070,881 - 78,084,128 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ankrd40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,078,834 - 11,085,303 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,078,839 - 11,085,303 (+)NCBIChiLan1.0ChiLan1.0
ANKRD40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,885,141 - 66,899,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,692,142 - 71,706,628 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,787,502 - 44,802,232 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,660,790 - 49,668,423 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,660,790 - 49,668,423 (-)Ensemblpanpan1.1panPan2
Ankrd40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,036,673 - 26,052,409 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,022,545 - 11,039,652 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,022,644 - 11,038,461 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,978,215 - 26,995,714 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,978,213 - 26,995,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21227,118,390 - 27,136,049 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,629,764 - 42,644,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,629,773 - 42,642,046 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,345,885 - 13,360,940 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247956,559,983 - 6,571,847 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ANKRD40
128 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 16 6 6 5 12 8 10 6
Low 1 6 6 6 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000038293   ⟹   ENSCAFP00000033988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl926,599,762 - 26,605,484 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845026138   ⟹   ENSCAFP00845020605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl927,391,901 - 27,404,651 (-)Ensembl
RefSeq Acc Id: XM_038485902   ⟹   XP_038341830
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1926,159,313 - 26,171,868 (-)NCBI
RefSeq Acc Id: XM_038547689   ⟹   XP_038403617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0926,548,375 - 26,561,146 (-)NCBI
RefSeq Acc Id: XM_038605926   ⟹   XP_038461854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha925,990,159 - 26,002,924 (-)NCBI
RefSeq Acc Id: XM_038611661   ⟹   XP_038467589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0926,418,069 - 26,430,849 (-)NCBI
RefSeq Acc Id: XM_038676886   ⟹   XP_038532814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0927,391,890 - 27,404,661 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000033988   ⟸   ENSCAFT00000038293
RefSeq Acc Id: XP_038341830   ⟸   XM_038485902
RefSeq Acc Id: XP_038467589   ⟸   XM_038611661
RefSeq Acc Id: XP_038532814   ⟸   XM_038676886
- UniProtKB: A0A8C0TZW5 (UniProtKB/TrEMBL),   A0A8C0R719 (UniProtKB/TrEMBL),   A0A8I3NU51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038461854   ⟸   XM_038605926
- UniProtKB: A0A8C0TZW5 (UniProtKB/TrEMBL),   A0A8C0R719 (UniProtKB/TrEMBL),   A0A8I3NU51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403617   ⟸   XM_038547689
- UniProtKB: A0A8C0R719 (UniProtKB/TrEMBL),   A0A8C0TZW5 (UniProtKB/TrEMBL),   A0A8I3NU51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845020605   ⟸   ENSCAFT00845026138

Promoters
RGD ID:13684598
Promoter ID:EPDNEW_C2665
Type:multiple initiation site
Name:ANKRD40_1
Description:ankyrin repeat domain 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1926,610,422 - 26,610,482EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024785 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016292 UniProtKB/TrEMBL
  ENSCAFG00040025875 UniProtKB/TrEMBL
  ENSCAFG00845014612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000038293.5 UniProtKB/TrEMBL
  ENSCAFT00030030023.1 UniProtKB/TrEMBL
  ENSCAFT00040048375.1 UniProtKB/TrEMBL
  ENSCAFT00845026138 ENTREZGENE
  ENSCAFT00845026138.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD40 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene ANKRD40 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 40 UniProtKB/TrEMBL
  PTHR24192 UniProtKB/TrEMBL
Pfam Ank_4 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8C0R719 ENTREZGENE
  A0A8C0TZW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NU51 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37903 ENTREZGENE