TMEM220 (transmembrane protein 220) - Rat Genome Database

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Gene: TMEM220 (transmembrane protein 220) Canis lupus familiaris
Analyze
Symbol: TMEM220
Name: transmembrane protein 220
RGD ID: 12144815
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,984,756 - 34,995,778 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,985,492 - 34,995,784 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,121,586 - 35,133,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,090,047 - 35,101,561 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1535,055,508 - 35,067,016 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,012,417 - 35,023,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,193,771 - 35,205,311 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
TMEM220
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,984,756 - 34,995,778 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,985,492 - 34,995,784 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,121,586 - 35,133,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,090,047 - 35,101,561 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1535,055,508 - 35,067,016 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,012,417 - 35,023,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,193,771 - 35,205,311 (-)NCBIUU_Cfam_GSD_1.0
TMEM220
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381710,711,133 - 10,730,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1710,699,015 - 10,730,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371710,614,450 - 10,633,340 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361710,557,364 - 10,574,371 (-)NCBINCBI36Build 36hg18NCBI36
Celera1710,647,493 - 10,664,502 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef1710,516,685 - 10,533,692 (-)NCBIHuRef
CHM1_11710,626,849 - 10,643,856 (-)NCBICHM1_1
T2T-CHM13v2.01710,618,686 - 10,637,574 (-)NCBIT2T-CHM13v2.0
Tmem220
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,915,959 - 66,927,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,915,980 - 66,926,138 (+)EnsemblGRCm39 Ensembl
GRCm381167,025,154 - 67,035,312 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,025,154 - 67,035,312 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,838,656 - 66,848,292 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,841,349 - 66,850,985 (+)NCBIMGSCv36mm8
Celera1173,964,497 - 73,974,141 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
Tmem220
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,218,782 - 52,229,302 (+)NCBIGRCr8
mRatBN7.21051,719,777 - 51,728,792 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1051,719,777 - 51,728,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1056,375,727 - 56,384,855 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,865,699 - 55,874,827 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,376,076 - 51,385,213 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01053,570,980 - 53,579,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1053,570,989 - 53,579,321 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01053,321,978 - 53,331,027 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41053,726,472 - 53,735,025 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11053,687,155 - 53,748,648 (+)NCBI
Celera1050,902,896 - 50,911,906 (+)NCBICelera
Cytogenetic Map10q24NCBI
Tmem220
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554676,487,925 - 6,503,178 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554676,487,936 - 6,503,178 (+)NCBIChiLan1.0ChiLan1.0
Tmem220
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,077,192 - 50,092,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,550,467 - 3,567,091 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365953,552,393 - 3,567,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM220
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1255,438,198 - 55,454,590 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11255,438,199 - 55,454,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21258,068,670 - 58,085,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM220
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,054,725 - 10,072,168 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605911,272,641 - 11,289,948 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem220
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,071,790 - 13,085,667 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,071,316 - 13,085,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM220
97 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 18 6 6 6 9 5
Low 3 5 4 6 6 6 6 8 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005620323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000027890   ⟹   ENSCAFP00000025937
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl534,985,492 - 34,995,784 (-)Ensembl
RefSeq Acc Id: XM_038475701   ⟹   XP_038331629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1535,055,508 - 35,067,016 (-)NCBI
RefSeq Acc Id: XM_038475702   ⟹   XP_038331630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1535,055,508 - 35,067,016 (-)NCBI
RefSeq Acc Id: XM_038475703   ⟹   XP_038331631
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1535,055,508 - 35,067,016 (-)NCBI
RefSeq Acc Id: XM_038516418   ⟹   XP_038372346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha535,121,586 - 35,133,099 (-)NCBI
RefSeq Acc Id: XM_038516419   ⟹   XP_038372347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha535,121,586 - 35,133,099 (-)NCBI
RefSeq Acc Id: XM_038516423   ⟹   XP_038372351
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha535,121,586 - 35,133,099 (-)NCBI
RefSeq Acc Id: XM_038536886   ⟹   XP_038392814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0535,193,771 - 35,205,311 (-)NCBI
RefSeq Acc Id: XM_038536887   ⟹   XP_038392815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0535,193,771 - 35,205,311 (-)NCBI
RefSeq Acc Id: XM_038536888   ⟹   XP_038392816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0535,193,771 - 35,205,311 (-)NCBI
RefSeq Acc Id: XM_038601035   ⟹   XP_038456963
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0535,012,417 - 35,023,930 (-)NCBI
RefSeq Acc Id: XM_038601036   ⟹   XP_038456964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0535,012,417 - 35,023,930 (-)NCBI
RefSeq Acc Id: XM_038601037   ⟹   XP_038456965
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0535,012,417 - 35,023,930 (-)NCBI
RefSeq Acc Id: XM_038665604   ⟹   XP_038521532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0535,090,047 - 35,101,561 (-)NCBI
RefSeq Acc Id: XM_038665605   ⟹   XP_038521533
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0535,090,047 - 35,101,561 (-)NCBI
RefSeq Acc Id: XM_038665606   ⟹   XP_038521534
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0535,090,047 - 35,101,561 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000025937   ⟸   ENSCAFT00000027890
RefSeq Acc Id: XP_038331631   ⟸   XM_038475703
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038331630   ⟸   XM_038475702
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038331629   ⟸   XM_038475701
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038456965   ⟸   XM_038601037
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038456964   ⟸   XM_038601036
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038456963   ⟸   XM_038601035
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038521534   ⟸   XM_038665606
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JJS2 (UniProtKB/TrEMBL),   A0A8C0T1R6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038521533   ⟸   XM_038665605
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038521532   ⟸   XM_038665604
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038372351   ⟸   XM_038516423
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JJS2 (UniProtKB/TrEMBL),   A0A8C0T1R6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038372347   ⟸   XM_038516419
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038372346   ⟸   XM_038516418
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038392816   ⟸   XM_038536888
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M3D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392815   ⟸   XM_038536887
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038392814   ⟸   XM_038536886
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017596 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002180 UniProtKB/TrEMBL
  ENSCAFG00040018515 UniProtKB/TrEMBL
  ENSCAFG00845002881 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027890.5 UniProtKB/TrEMBL
  ENSCAFT00000103288.1 UniProtKB/TrEMBL
  ENSCAFT00000108732.1 UniProtKB/TrEMBL
  ENSCAFT00030003997.1 UniProtKB/TrEMBL
  ENSCAFT00040034196.1 UniProtKB/TrEMBL
  ENSCAFT00040034228.1 UniProtKB/TrEMBL
  ENSCAFT00845005093.1 UniProtKB/TrEMBL
  ENSCAFT00845005109.1 UniProtKB/TrEMBL
InterPro TMEM220 UniProtKB/TrEMBL
NCBI Gene TMEM220 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 220 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 220 UniProtKB/TrEMBL
Pfam TMEM220 UniProtKB/TrEMBL
UniProt A0A8C0JJS2 ENTREZGENE
  A0A8C0M3D0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T1R6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T2K0_CANLF UniProtKB/TrEMBL
  A0A8I3MGJ5_CANLF UniProtKB/TrEMBL
  A0A8I3MQY6_CANLF UniProtKB/TrEMBL
  A0A8P0NJ20_CANLF UniProtKB/TrEMBL
  A0A8P0PLJ7_CANLF UniProtKB/TrEMBL
  A0A8P0PRP1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:49886 ENTREZGENE