UTP11 (UTP11 small subunit processome component) - Rat Genome Database

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Gene: UTP11 (UTP11 small subunit processome component) Canis lupus familiaris
Analyze
Symbol: UTP11
Name: UTP11 small subunit processome component
RGD ID: 12143213
Description: INVOLVED IN nervous system development (inferred); positive regulation of apoptotic process (inferred); ribosomal small subunit biogenesis (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); extracellular space (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable U3 small nucleolar RNA-associated protein 11; UTP11, small subunit processome component; UTP11, small subunit processome component homolog; UTP11, small subunit processome component homolog (S. cerevisiae)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,569,002 - 4,579,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,568,202 - 4,579,023 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha154,810,822 - 4,821,250 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,696,591 - 4,707,069 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,696,584 - 4,707,060 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,557,164 - 4,567,601 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,623,483 - 4,633,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,639,987 - 4,650,429 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UTP11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,569,002 - 4,579,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,568,202 - 4,579,023 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha154,810,822 - 4,821,250 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,696,591 - 4,707,069 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,696,584 - 4,707,060 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,557,164 - 4,567,601 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,623,483 - 4,633,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,639,987 - 4,650,429 (-)NCBIUU_Cfam_GSD_1.0
UTP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38138,012,734 - 38,024,820 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl138,009,258 - 38,024,820 (+)EnsemblGRCh38hg38GRCh38
GRCh37138,478,406 - 38,490,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36138,250,971 - 38,263,084 (+)NCBINCBI36Build 36hg18NCBI36
Celera136,757,020 - 36,769,134 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,596,946 - 36,609,059 (+)NCBIHuRef
CHM1_1138,594,085 - 38,606,194 (+)NCBICHM1_1
T2T-CHM13v2.0137,879,913 - 37,892,000 (+)NCBIT2T-CHM13v2.0
Utp11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,571,173 - 124,587,395 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,571,953 - 124,587,393 (-)EnsemblGRCm39 Ensembl
GRCm384124,678,232 - 124,693,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,678,160 - 124,693,600 (-)EnsemblGRCm38mm10GRCm38
MGSCv374124,356,008 - 124,370,798 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,181,068 - 124,195,858 (-)NCBIMGSCv36mm8
Celera4123,004,367 - 123,019,143 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.87NCBI
Utp11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,215,974 - 142,230,859 (-)NCBIGRCr8
mRatBN7.25136,931,279 - 136,946,164 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5136,931,008 - 136,946,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,634,525 - 139,649,505 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,404,538 - 141,419,516 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,411,719 - 141,426,695 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,666,288 - 142,681,173 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,666,289 - 142,681,173 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,437,399 - 146,452,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,003,627 - 144,018,513 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5135,454,646 - 135,469,575 (-)NCBICelera
Cytogenetic Map5q36NCBI
Utp11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,733,018 - 15,743,678 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,733,479 - 15,743,545 (+)NCBIChiLan1.0ChiLan1.0
UTP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,814,187 - 188,826,005 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11187,943,343 - 187,955,164 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,286,274 - 37,297,368 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,634,008 - 38,645,068 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,633,935 - 38,645,068 (+)Ensemblpanpan1.1panPan2
Utp11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,307,541 - 54,319,032 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647420,132,253 - 20,143,981 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647420,132,300 - 20,143,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,993,593 - 94,006,898 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,993,686 - 94,006,889 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2686,764,391 - 86,777,591 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UTP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12094,845,537 - 94,858,198 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2094,845,560 - 94,858,192 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,967,810 - 21,980,384 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Utp11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,656,380 - 20,668,896 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,656,349 - 20,665,739 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UTP11
92 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000005148   ⟹   ENSCAFP00000004768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl154,568,202 - 4,579,023 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053638   ⟹   ENSCAFP00845042147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl154,696,584 - 4,707,060 (-)Ensembl
RefSeq Acc Id: XM_038495486   ⟹   XP_038351414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1154,557,164 - 4,567,601 (-)NCBI
RefSeq Acc Id: XM_038557836   ⟹   XP_038413764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0154,639,987 - 4,650,429 (-)NCBI
RefSeq Acc Id: XM_038621711   ⟹   XP_038477639
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0154,623,483 - 4,633,891 (-)NCBI
RefSeq Acc Id: XM_038687482   ⟹   XP_038543410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0154,696,591 - 4,707,069 (-)NCBI
RefSeq Acc Id: XM_532552   ⟹   XP_532552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1154,569,002 - 4,579,065 (-)NCBI
Dog10K_Boxer_Tasha154,810,822 - 4,821,250 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_532552   ⟸   XM_532552
- UniProtKB: A0A8C0K1E4 (UniProtKB/TrEMBL),   A0A8C0RXU2 (UniProtKB/TrEMBL),   A0A8I3Q8Z9 (UniProtKB/TrEMBL),   A0A8C0NT31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000004768   ⟸   ENSCAFT00000005148
RefSeq Acc Id: XP_038351414   ⟸   XM_038495486
RefSeq Acc Id: XP_038477639   ⟸   XM_038621711
RefSeq Acc Id: XP_038543410   ⟸   XM_038687482
- UniProtKB: A0A8C0K1E4 (UniProtKB/TrEMBL),   A0A8C0RXU2 (UniProtKB/TrEMBL),   A0A8I3Q8Z9 (UniProtKB/TrEMBL),   A0A8C0NT31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413764   ⟸   XM_038557836
- UniProtKB: A0A8C0K1E4 (UniProtKB/TrEMBL),   A0A8C0NT31 (UniProtKB/TrEMBL),   A0A8C0RXU2 (UniProtKB/TrEMBL),   A0A8I3Q8Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042147   ⟸   ENSCAFT00845053638

Promoters
RGD ID:13685856
Promoter ID:EPDNEW_C3924
Type:initiation region
Name:UTP11_1
Description:UTP11, small subunit processome component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1154,579,035 - 4,579,095EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003202 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018234 UniProtKB/TrEMBL
  ENSCAFG00040004725 UniProtKB/TrEMBL
  ENSCAFG00845030237 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005148.5 UniProtKB/TrEMBL
  ENSCAFT00030033591.1 UniProtKB/TrEMBL
  ENSCAFT00040008878.1 UniProtKB/TrEMBL
  ENSCAFT00845053638 ENTREZGENE
  ENSCAFT00845053638.1 UniProtKB/TrEMBL
InterPro SSU_processome_Utp11 UniProtKB/TrEMBL
KEGG Report cfa:475325 UniProtKB/TrEMBL
NCBI Gene UTP11 ENTREZGENE
PANTHER PTHR12838 UniProtKB/TrEMBL
  U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11-RELATED UniProtKB/TrEMBL
Pfam Utp11 UniProtKB/TrEMBL
PIRSF U3snoRNP11 UniProtKB/TrEMBL
UniProt A0A8C0K1E4 ENTREZGENE
  A0A8C0NT31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RXU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q8Z9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:48208 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 UTP11  UTP11 small subunit processome component    UTP11, small subunit processome component  Symbol and/or name change 5135510 APPROVED
2017-05-30 UTP11  UTP11, small subunit processome component    UTP11, small subunit processome component homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED