ASPM (assembly factor for spindle microtubules) - Rat Genome Database

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Gene: ASPM (assembly factor for spindle microtubules) Canis lupus familiaris
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Symbol: ASPM
Name: assembly factor for spindle microtubules
RGD ID: 12142484
Description: ENCODES a protein that exhibits calmodulin binding (inferred); INVOLVED IN asymmetric cell division (ortholog); brain development (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); COVID-19 (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN apical plasma membrane (ortholog); centrosome (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: abnormal spindle microtubule assembly; abnormal spindle-like microcephaly-associated protein homolog; asp (abnormal spindle) homolog, microcephaly associated; asp (abnormal spindle)-like, microcephaly associated
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.175,591,530 - 5,663,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl75,590,957 - 5,660,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,214,490 - 5,283,621 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,281,249 - 5,357,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,281,133 - 5,357,008 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,223,076 - 5,291,758 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,324,076 - 5,392,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,356,703 - 5,425,864 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14704186   PMID:14722158   PMID:22301074  


Genomics

Comparative Map Data
ASPM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.175,591,530 - 5,663,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl75,590,957 - 5,660,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,214,490 - 5,283,621 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,281,249 - 5,357,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,281,133 - 5,357,008 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,223,076 - 5,291,758 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,324,076 - 5,392,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,356,703 - 5,425,864 (+)NCBIUU_Cfam_GSD_1.0
ASPM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381197,084,127 - 197,146,669 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1197,084,121 - 197,146,694 (-)EnsemblGRCh38hg38GRCh38
GRCh371197,053,257 - 197,115,799 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,319,997 - 195,382,287 (-)NCBINCBI36Build 36hg18NCBI36
Build 341193,785,110 - 193,847,224NCBI
Celera1170,178,726 - 170,241,291 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1168,210,775 - 168,273,332 (-)NCBIHuRef
CHM1_11198,475,715 - 198,538,290 (-)NCBICHM1_1
T2T-CHM13v2.01196,345,951 - 196,408,493 (-)NCBIT2T-CHM13v2.0
Aspm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391139,381,450 - 139,421,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1139,382,510 - 139,421,829 (+)EnsemblGRCm39 Ensembl
GRCm381139,454,188 - 139,494,088 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1139,454,772 - 139,494,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv371141,351,350 - 141,390,665 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,271,184 - 141,310,501 (+)NCBIMGSCv36mm8
Celera1142,091,996 - 142,131,299 (+)NCBICelera
Cytogenetic Map1FNCBI
cM Map161.45NCBI
Aspm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,625,584 - 53,674,489 (+)NCBIGRCr8
mRatBN7.21351,074,849 - 51,123,755 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1351,074,849 - 51,123,755 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1353,674,430 - 53,723,339 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01354,962,363 - 55,011,271 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01352,237,670 - 52,286,704 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01356,546,021 - 56,591,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,546,021 - 56,591,793 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01361,564,059 - 61,609,831 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41352,811,658 - 52,860,925 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11352,825,867 - 52,874,707 (+)NCBI
Celera1351,338,709 - 51,386,444 (+)NCBICelera
Cytogenetic Map13q13NCBI
Aspm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540633,661,322 - 33,720,259 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540633,665,675 - 33,720,468 (-)NCBIChiLan1.0ChiLan1.0
ASPM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2152,234,381 - 52,296,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1152,203,536 - 52,265,974 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01172,674,890 - 172,737,426 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,988,297 - 177,050,810 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,988,297 - 177,050,810 (-)Ensemblpanpan1.1panPan2
Aspm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934477,418,215 - 77,467,185 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365676,653,728 - 6,701,752 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365676,653,382 - 6,701,856 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASPM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1019,975,192 - 20,039,623 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11019,971,516 - 20,039,680 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21024,612,797 - 24,657,404 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASPM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12532,269,518 - 32,334,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2532,281,424 - 32,334,977 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605533,177,890 - 33,242,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aspm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247983,165,393 - 3,225,181 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247983,164,145 - 3,223,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ASPM
728 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000018114   ⟹   ENSCAFP00000016776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl75,590,957 - 5,660,919 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001943   ⟹   ENSCAFP00845001526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl75,281,133 - 5,357,008 (+)Ensembl
RefSeq Acc Id: NM_001197076   ⟹   NP_001184005
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.175,591,545 - 5,660,919 (+)NCBI
Dog10K_Boxer_Tasha75,214,490 - 5,283,621 (+)NCBI
ROS_Cfam_1.075,281,264 - 5,357,008 (+)NCBI
UMICH_Zoey_3.175,223,076 - 5,291,758 (+)NCBI
UNSW_CanFamBas_1.075,324,076 - 5,392,760 (+)NCBI
UU_Cfam_GSD_1.075,356,703 - 5,425,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038670512   ⟹   XP_038526440
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.075,281,249 - 5,357,084 (+)NCBI
RefSeq Acc Id: NP_001184005   ⟸   NM_001197076
- UniProtKB: P62286 (UniProtKB/Swiss-Prot),   A0A8I3MHG5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000016776   ⟸   ENSCAFT00000018114
RefSeq Acc Id: XP_038526440   ⟸   XM_038670512
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCAFP00845001526   ⟸   ENSCAFT00845001943
Protein Domains
Calponin-homology (CH)   IQ

Promoters
RGD ID:13683883
Promoter ID:EPDNEW_C1951
Type:single initiation site
Name:ASPM_1
Description:abnormal spindle microtubule assembly
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.175,591,480 - 5,591,540EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011403 Ensembl, UniProtKB/Swiss-Prot
  ENSCAFG00030022249 UniProtKB/TrEMBL
  ENSCAFG00040013387 UniProtKB/TrEMBL
  ENSCAFG00845001126 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018114.5 UniProtKB/Swiss-Prot
  ENSCAFT00030041324.1 UniProtKB/TrEMBL
  ENSCAFT00040024836.1 UniProtKB/TrEMBL
  ENSCAFT00040024895.1 UniProtKB/TrEMBL
  ENSCAFT00845001943 ENTREZGENE
  ENSCAFT00845001943.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASPM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CellDiv_DevSignal_Domain UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:480009 UniProtKB/Swiss-Prot
NCBI Gene ASPM ENTREZGENE
PANTHER ABNORMAL SPINDLE-LIKE MICROCEPHALY-ASSOCIATED PROTEIN ISOFORM X1 UniProtKB/Swiss-Prot
  PTHR22590:SF4 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 17 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam ASH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0P4X9_CANLF UniProtKB/TrEMBL
  A0A8C0SJB9_CANLF UniProtKB/TrEMBL
  A0A8C0SK45_CANLF UniProtKB/TrEMBL
  A0A8I3MHG5 ENTREZGENE, UniProtKB/TrEMBL
  ASPM_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
  Q6ULP6_CANLF UniProtKB/TrEMBL
  Q6ULQ6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38189 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-25 ASPM  assembly factor for spindle microtubules  ASPM  abnormal spindle microtubule assembly  Symbol and/or name change 5135510 APPROVED