H2BC14 (H2B clustered histone 14) - Rat Genome Database

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Gene: H2BC14 (H2B clustered histone 14) Canis lupus familiaris
Analyze
Symbol: H2BC14 (Ensembl: H2BC4)
Name: H2B clustered histone 14 (Ensembl:H2B clustered histone 4)
RGD ID: 12142028
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response in mucosa (ortholog); ASSOCIATED WITH genetic disease (ortholog); juvenile rheumatoid arthritis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1; histone H2B type 1-C/E/F/G/I; LOC611482
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,006,472 - 25,035,326 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,006,510 - 25,006,890 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3524,862,140 - 24,862,625 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,195,446 - 25,195,931 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3524,178,247 - 24,181,892 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13524,970,795 - 24,971,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,023,727 - 25,024,215 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,487,789 - 26,488,268 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
H2BC14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,006,472 - 25,035,326 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,006,510 - 25,006,890 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3524,862,140 - 24,862,625 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,195,446 - 25,195,931 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3524,178,247 - 24,181,892 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13524,970,795 - 24,971,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,023,727 - 25,024,215 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,487,789 - 26,488,268 (+)NCBIUU_Cfam_GSD_1.0
H2BC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,216,200 - 26,216,688 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,216,200 - 26,216,688 (-)EnsemblGRCh38hg38GRCh38
GRCh37626,216,428 - 26,216,916 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,324,407 - 26,324,851 (-)NCBINCBI36Build 36hg18NCBI36
Build 34626,324,406 - 26,324,851NCBI
Celera627,445,731 - 27,446,175 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef626,159,428 - 26,159,872 (-)NCBIHuRef
CHM1_1626,218,589 - 26,219,033 (-)NCBICHM1_1
T2T-CHM13v2.0626,084,677 - 26,085,165 (-)NCBIT2T-CHM13v2.0
H2bc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391323,755,574 - 23,756,037 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1323,755,570 - 23,756,187 (+)EnsemblGRCm39 Ensembl
GRCm381323,571,400 - 23,571,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,571,396 - 23,572,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371323,663,269 - 23,663,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,578,861 - 23,579,479 (+)NCBIMGSCv36mm8
Celera1323,803,330 - 23,803,944 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.8NCBI
H2bc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,404,405 - 47,405,155 (+)NCBIGRCr8
mRatBN7.21742,708,658 - 42,709,408 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01744,748,445 - 44,748,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,748,482 - 44,748,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,717,789 - 58,718,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,343,037 - 50,343,698 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,345,877 - 50,346,258 (+)NCBI
Celera1753,752,241 - 53,752,715 (-)NCBICelera
Cytogenetic Map17p11NCBI
LOC100985450
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,861,462 - 40,864,195 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,865,109 - 36,865,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0626,051,127 - 26,051,730 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,710,374 - 26,711,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,766,746 - 26,767,126 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl626,695,177 - 26,695,557 (+)Ensemblpanpan1.1panPan2
LOC103222001
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,035,117 - 46,035,587 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,132,622 - 46,132,999 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604426,152,750 - 26,153,241 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H2BC14
540 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845028039   ⟹   ENSCAFP00845022061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3525,195,477 - 25,195,857 (+)Ensembl
RefSeq Acc Id: XM_038446616   ⟹   XP_038302544
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03525,195,446 - 25,195,931 (+)NCBI
RefSeq Acc Id: XM_038520746   ⟹   XP_038376674
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13524,970,795 - 24,971,268 (+)NCBI
RefSeq Acc Id: XM_038584426   ⟹   XP_038440354
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03526,487,789 - 26,488,268 (+)NCBI
RefSeq Acc Id: XM_038648822   ⟹   XP_038504750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03525,023,727 - 25,024,215 (+)NCBI
RefSeq Acc Id: XM_849151   ⟹   XP_854244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13525,006,472 - 25,035,326 (+)NCBI
Dog10K_Boxer_Tasha3524,862,140 - 24,862,625 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_854244   ⟸   XM_849151
- UniProtKB: H9GWB1 (UniProtKB/TrEMBL),   A0A8C0JMW3 (UniProtKB/TrEMBL),   A0A8C0P6N2 (UniProtKB/TrEMBL),   A0A8C0PBE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038376674   ⟸   XM_038520746
RefSeq Acc Id: XP_038504750   ⟸   XM_038648822
RefSeq Acc Id: XP_038302544   ⟸   XM_038446616
- UniProtKB: A0A8C0JMW3 (UniProtKB/TrEMBL),   A0A8C0P6N2 (UniProtKB/TrEMBL),   H9GWB1 (UniProtKB/TrEMBL),   A0A8C0PBE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440354   ⟸   XM_038584426
- UniProtKB: A0A8C0JMW3 (UniProtKB/TrEMBL),   A0A8C0P6N2 (UniProtKB/TrEMBL),   A0A8C0PBE4 (UniProtKB/TrEMBL),   H9GWB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845022061   ⟸   ENSCAFT00845028039
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000044000 Ensembl
  ENSCAFG00000050352 UniProtKB/TrEMBL
  ENSCAFG00000051429 UniProtKB/TrEMBL
  ENSCAFG00000056511 UniProtKB/TrEMBL
  ENSCAFG00000056949 UniProtKB/TrEMBL
  ENSCAFG00000059256 UniProtKB/TrEMBL
  ENSCAFG00000059294 UniProtKB/TrEMBL
  ENSCAFG00000059409 UniProtKB/TrEMBL
  ENSCAFG00030020104 UniProtKB/TrEMBL
  ENSCAFG00030020133 UniProtKB/TrEMBL
  ENSCAFG00030020294 UniProtKB/TrEMBL
  ENSCAFG00030020338 UniProtKB/TrEMBL
  ENSCAFG00030021209 UniProtKB/TrEMBL
  ENSCAFG00030021366 UniProtKB/TrEMBL
  ENSCAFG00040009402 UniProtKB/TrEMBL
  ENSCAFG00040009537 UniProtKB/TrEMBL
  ENSCAFG00040025008 UniProtKB/TrEMBL
  ENSCAFG00040025024 UniProtKB/TrEMBL
  ENSCAFG00040025030 UniProtKB/TrEMBL
  ENSCAFG00040025067 UniProtKB/TrEMBL
  ENSCAFG00040025121 UniProtKB/TrEMBL
  ENSCAFG00845015635 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845015738 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFG00845016008 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845025831 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845025893 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845026093 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845026281 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000101951.1 UniProtKB/TrEMBL
  ENSCAFT00000101976.1 UniProtKB/TrEMBL
  ENSCAFT00000103084.1 UniProtKB/TrEMBL
  ENSCAFT00000106034.1 UniProtKB/TrEMBL
  ENSCAFT00000106966.1 UniProtKB/TrEMBL
  ENSCAFT00000107807.1 UniProtKB/TrEMBL
  ENSCAFT00000109496.1 UniProtKB/TrEMBL
  ENSCAFT00030036911.1 UniProtKB/TrEMBL
  ENSCAFT00030036962.1 UniProtKB/TrEMBL
  ENSCAFT00030037246.1 UniProtKB/TrEMBL
  ENSCAFT00030037335.1 UniProtKB/TrEMBL
  ENSCAFT00030038926.1 UniProtKB/TrEMBL
  ENSCAFT00030039191.1 UniProtKB/TrEMBL
  ENSCAFT00040017427.1 UniProtKB/TrEMBL
  ENSCAFT00040017703.1 UniProtKB/TrEMBL
  ENSCAFT00040046603.1 UniProtKB/TrEMBL
  ENSCAFT00040046636.1 UniProtKB/TrEMBL
  ENSCAFT00040046654.1 UniProtKB/TrEMBL
  ENSCAFT00040046733.1 UniProtKB/TrEMBL
  ENSCAFT00040046825.1 UniProtKB/TrEMBL
  ENSCAFT00845027862.1 UniProtKB/TrEMBL
  ENSCAFT00845028039 ENTREZGENE
  ENSCAFT00845028039.1 UniProtKB/TrEMBL
  ENSCAFT00845028470.1 UniProtKB/TrEMBL
  ENSCAFT00845045567.1 UniProtKB/TrEMBL
  ENSCAFT00845045678.1 UniProtKB/TrEMBL
  ENSCAFT00845046035.1 UniProtKB/TrEMBL
  ENSCAFT00845046345.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
KEGG Report cfa:100856186 UniProtKB/TrEMBL
  cfa:106558265 UniProtKB/TrEMBL
  cfa:488267 UniProtKB/TrEMBL
  cfa:611465 UniProtKB/TrEMBL
  cfa:611482 UniProtKB/TrEMBL
NCBI Gene LOC611482 ENTREZGENE
PANTHER HISTONE H2B TYPE 1-J UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8C0JMW3 ENTREZGENE
  A0A8C0P6N2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PBE4 ENTREZGENE, UniProtKB/TrEMBL
  H9GWB1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83741 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-05 H2BC14  H2B clustered histone 14  LOC611482  histone H2B type 1  Symbol and/or name change 5135510 APPROVED