SAMD1 (sterile alpha motif domain containing 1) - Rat Genome Database

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Gene: SAMD1 (sterile alpha motif domain containing 1) Canis lupus familiaris
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Symbol: SAMD1
Name: sterile alpha motif domain containing 1
RGD ID: 12141224
Description: ENCODES a protein that exhibits chromatin binding (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN foam cell differentiation (ortholog); lipoprotein lipid oxidation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN extracellular space (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: atherin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,427,935 - 48,430,703 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,302,467 - 48,305,418 (+)NCBI
ROS_Cfam_1.02048,945,742 - 48,948,700 (+)NCBI
UMICH_Zoey_3.12048,156,927 - 48,159,873 (+)NCBI
UNSW_CanFamBas_1.02048,583,486 - 48,586,439 (+)NCBI
UU_Cfam_GSD_1.02048,826,306 - 48,829,256 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SAMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,427,935 - 48,430,703 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,302,467 - 48,305,418 (+)NCBI
ROS_Cfam_1.02048,945,742 - 48,948,700 (+)NCBI
UMICH_Zoey_3.12048,156,927 - 48,159,873 (+)NCBI
UNSW_CanFamBas_1.02048,583,486 - 48,586,439 (+)NCBI
UU_Cfam_GSD_1.02048,826,306 - 48,829,256 (+)NCBI
SAMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,087,851 - 14,090,751 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1914,087,851 - 14,091,036 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,198,663 - 14,201,563 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,060,229 - 14,062,232 (-)NCBINCBI36hg18NCBI36
Build 341914,060,228 - 14,062,232NCBI
Celera1914,093,031 - 14,122,123 (-)NCBI
Cytogenetic Map19p13.12NCBI
HuRef1913,770,885 - 13,799,416 (-)NCBIHuRef
CHM1_11914,199,799 - 14,201,760 (-)NCBICHM1_1
T2T-CHM13v2.01914,214,143 - 14,217,361 (-)NCBI
Samd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,724,145 - 84,727,044 (+)NCBIGRCm39mm39
GRCm39 Ensembl884,724,130 - 84,727,038 (+)Ensembl
GRCm38883,997,516 - 84,000,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,997,501 - 84,000,409 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl883,997,672 - 84,000,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,521,571 - 86,524,285 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,887,777 - 86,890,491 (+)NCBImm8
Celera888,278,279 - 88,293,704 (+)NCBICelera
Cytogenetic Map8C2NCBI
Samd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21924,151,136 - 24,154,475 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1924,151,128 - 24,154,488 (-)Ensembl
Rnor_6.01925,119,560 - 25,122,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,120,128 - 25,122,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,096,683 - 36,099,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,837,118 - 25,839,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11925,841,978 - 25,843,961 (-)NCBI
Celera1923,699,355 - 23,701,352 (-)NCBICelera
Cytogenetic Map19q11NCBI
Samd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541532,789,937 - 32,791,421 (-)NCBIChiLan1.0ChiLan1.0
SAMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11914,380,192 - 14,381,843 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01913,653,166 - 13,656,397 (-)NCBIMhudiblu_PPA_v0panPan3
Samd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,608,258 - 207,609,749 (+)NCBI
SpeTri2.0NW_0049366592,744,967 - 2,750,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,096,187 - 65,099,794 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,096,499 - 65,099,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,371,876 - 65,373,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,735,255 - 12,743,871 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660746,916,107 - 6,919,352 (+)NCBIVero_WHO_p1.0
Samd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,315,854 - 1,318,152 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046249011,315,309 - 1,318,167 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038426586   ⟹   XP_038282514
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02048,945,742 - 48,948,700 (+)NCBI
RefSeq Acc Id: XM_038455276   ⟹   XP_038311204
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2048,302,467 - 48,305,418 (+)NCBI
RefSeq Acc Id: XM_038505040   ⟹   XP_038360968
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12048,156,927 - 48,159,873 (+)NCBI
RefSeq Acc Id: XM_038565313   ⟹   XP_038421241
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02048,826,306 - 48,829,256 (+)NCBI
RefSeq Acc Id: XM_038629432   ⟹   XP_038485360
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,583,486 - 48,586,439 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_038360968   ⟸   XM_038505040
RefSeq Acc Id: XP_038485360   ⟸   XM_038629432
RefSeq Acc Id: XP_038282514   ⟸   XM_038426586
RefSeq Acc Id: XP_038311204   ⟸   XM_038455276
RefSeq Acc Id: XP_038421241   ⟸   XM_038565313


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845025014 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00845034647 ENTREZGENE
  ENSCAFP00845034647.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845044209 ENTREZGENE
  ENSCAFT00845044209.1 UniProtKB/TrEMBL
NCBI Gene SAMD1 ENTREZGENE
UniProt A0A8I3PXF9_CANLF UniProtKB/TrEMBL