CDAN1 (codanin 1) - Rat Genome Database

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Gene: CDAN1 (codanin 1) Canis lupus familiaris
Analyze
Symbol: CDAN1
Name: codanin 1
RGD ID: 12141107
Description: INVOLVED IN chromatin organization (ortholog); protein localization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); congenital dyserythropoietic anemia (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endomembrane system (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: codanin-1; congenital dyserythropoietic anemia, type I
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,656,408 - 9,668,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,656,871 - 9,668,653 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,713,513 - 9,725,856 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,791,318 - 9,803,678 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,791,322 - 9,803,662 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,709,829 - 9,722,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,816,890 - 9,829,264 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,949,752 - 9,962,113 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CDAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,656,408 - 9,668,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,656,871 - 9,668,653 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,713,513 - 9,725,856 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,791,318 - 9,803,678 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,791,322 - 9,803,662 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,709,829 - 9,722,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,816,890 - 9,829,264 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,949,752 - 9,962,113 (-)NCBIUU_Cfam_GSD_1.0
CDAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,723,544 - 42,737,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,723,544 - 42,737,128 (-)EnsemblGRCh38hg38GRCh38
GRCh371543,015,742 - 43,029,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,803,052 - 40,816,709 (-)NCBINCBI36Build 36hg18NCBI36
Celera1519,783,515 - 19,796,376 (-)NCBICelera
Cytogenetic Map15q15.2NCBI
HuRef1519,864,346 - 19,878,007 (-)NCBIHuRef
CHM1_11543,134,131 - 43,147,791 (-)NCBICHM1_1
T2T-CHM13v2.01540,530,676 - 40,544,263 (-)NCBIT2T-CHM13v2.0
Cdan1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,546,635 - 120,561,998 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,546,635 - 120,680,609 (-)EnsemblGRCm39 Ensembl
GRCm382120,716,154 - 120,731,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,716,154 - 120,850,128 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,541,890 - 120,557,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,407,583 - 120,422,959 (-)NCBIMGSCv36mm8
Celera2121,869,489 - 121,884,807 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Cdan1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,129,664 - 128,143,520 (-)NCBIGRCr8
mRatBN7.23107,675,147 - 107,689,811 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,673,645 - 107,689,773 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03112,660,839 - 112,676,596 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,663,383 - 112,676,556 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,204,560 - 119,220,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,495,860 - 107,508,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13107,392,947 - 107,406,065 (-)NCBI
Celera3106,578,743 - 106,594,489 (-)NCBICelera
Cytogenetic Map3q35NCBI
Cdan1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,393,197 - 9,403,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554169,393,170 - 9,403,374 (-)NCBIChiLan1.0ChiLan1.0
CDAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,973,774 - 31,987,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11536,130,743 - 36,144,299 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,684,234 - 21,697,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,838,604 - 39,851,556 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,838,604 - 39,851,562 (-)Ensemblpanpan1.1panPan2
Cdan1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,139,818 - 88,153,418 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,988,738 - 6,001,649 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,988,215 - 6,001,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1128,641,430 - 128,655,554 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11128,641,411 - 128,655,556 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,535,533 - 143,549,679 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDAN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,235,277 - 40,248,224 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,235,297 - 40,250,757 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,767,346 - 100,780,135 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdan1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,827,889 - 9,839,215 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,827,372 - 9,839,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDAN1
122 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 14 1 4 8 10 1
Low 5 5 8 6 5 6 2 6 4 8 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022412517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000017777   ⟹   ENSCAFP00000016457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl309,656,871 - 9,668,653 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845037522   ⟹   ENSCAFP00845029399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl309,791,322 - 9,803,662 (-)Ensembl
RefSeq Acc Id: XM_038442092   ⟹   XP_038298020
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,791,318 - 9,803,678 (-)NCBI
RefSeq Acc Id: XM_038442093   ⟹   XP_038298021
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,791,318 - 9,803,678 (-)NCBI
RefSeq Acc Id: XM_038461636   ⟹   XP_038317564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha309,713,513 - 9,725,856 (-)NCBI
RefSeq Acc Id: XM_038461637   ⟹   XP_038317565
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha309,713,513 - 9,725,856 (-)NCBI
RefSeq Acc Id: XM_038516574   ⟹   XP_038372502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1309,709,829 - 9,722,180 (-)NCBI
RefSeq Acc Id: XM_038580187   ⟹   XP_038436115
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,949,752 - 9,962,113 (-)NCBI
RefSeq Acc Id: XM_038580188   ⟹   XP_038436116
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,949,752 - 9,962,113 (-)NCBI
RefSeq Acc Id: XM_038644472   ⟹   XP_038500400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,816,890 - 9,829,264 (-)NCBI
RefSeq Acc Id: XM_038644473   ⟹   XP_038500401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,816,890 - 9,829,264 (-)NCBI
RefSeq Acc Id: XR_005304719
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,791,977 - 9,803,678 (-)NCBI
RefSeq Acc Id: XR_005316547
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha309,714,172 - 9,725,856 (-)NCBI
RefSeq Acc Id: XR_005381543
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,950,411 - 9,962,113 (-)NCBI
RefSeq Acc Id: XR_005415353
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,817,551 - 9,829,264 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000016457   ⟸   ENSCAFT00000017777
RefSeq Acc Id: XP_038372502   ⟸   XM_038516574
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500401   ⟸   XM_038644473
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500400   ⟸   XM_038644472
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038298021   ⟸   XM_038442093
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PKG2 (UniProtKB/TrEMBL),   A0A8P0ND33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298020   ⟸   XM_038442092
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PKG2 (UniProtKB/TrEMBL),   A0A8P0ND33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317565   ⟸   XM_038461637
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PKG2 (UniProtKB/TrEMBL),   A0A8P0ND33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317564   ⟸   XM_038461636
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PKG2 (UniProtKB/TrEMBL),   A0A8P0ND33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436116   ⟸   XM_038580188
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PKG2 (UniProtKB/TrEMBL),   A0A8P0ND33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436115   ⟸   XM_038580187
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PKG2 (UniProtKB/TrEMBL),   A0A8P0ND33 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845029399   ⟸   ENSCAFT00845037522
Protein Domains
Codanin-1 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011174 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845021218 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017777.6 UniProtKB/TrEMBL
  ENSCAFT00845037522 ENTREZGENE
  ENSCAFT00845037522.1 UniProtKB/TrEMBL
InterPro Codanin-1 UniProtKB/TrEMBL
  Codanin-1_C UniProtKB/TrEMBL
NCBI Gene CDAN1 ENTREZGENE
PANTHER CODANIN-1 UniProtKB/TrEMBL
  PTHR28678 UniProtKB/TrEMBL
Pfam Codanin-1_C UniProtKB/TrEMBL
UniProt A0A8I3PKG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0ND33 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:59106 ENTREZGENE