TRMT10A (tRNA methyltransferase 10A) - Rat Genome Database

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Gene: TRMT10A (tRNA methyltransferase 10A) Canis lupus familiaris
Analyze
Symbol: TRMT10A
Name: tRNA methyltransferase 10A
RGD ID: 12140952
Description: ENCODES a protein that exhibits methyltransferase activity (inferred); transferase activity (inferred); tRNA (guanosine(9)-N1)-methyltransferase activity (inferred); INVOLVED IN magnesium ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Microcephaly, Short Stature, and Impaired Glucose Metabolism 1 (ortholog); Nervous System Malformations (ortholog); FOUND IN actin cytoskeleton (inferred); cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RG9MTD2; RNA (guanine-9-) methyltransferase domain containing 2; tRNA methyltransferase 10 homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13221,554,096 - 21,570,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3221,555,045 - 21,570,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3220,325,736 - 20,343,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03221,774,481 - 21,792,045 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3221,773,270 - 21,791,576 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13221,751,224 - 21,768,766 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03221,538,921 - 21,556,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03218,312,807 - 18,330,371 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IEA)
cytosol  (IEA)
membrane  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TRMT10A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13221,554,096 - 21,570,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3221,555,045 - 21,570,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3220,325,736 - 20,343,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03221,774,481 - 21,792,045 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3221,773,270 - 21,791,576 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13221,751,224 - 21,768,766 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03221,538,921 - 21,556,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03218,312,807 - 18,330,371 (+)NCBIUU_Cfam_GSD_1.0
TRMT10A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38499,546,711 - 99,564,039 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl499,546,709 - 99,564,039 (-)EnsemblGRCh38hg38GRCh38
GRCh374100,467,868 - 100,485,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364100,686,904 - 100,703,848 (-)NCBINCBI36Build 36hg18NCBI36
Build 344100,825,061 - 100,842,003NCBI
Celera497,765,280 - 97,782,608 (-)NCBICelera
Cytogenetic Map4q23NCBI
HuRef496,205,953 - 96,223,232 (-)NCBIHuRef
CHM1_14100,444,338 - 100,461,662 (-)NCBICHM1_1
T2T-CHM13v2.04102,861,479 - 102,878,808 (-)NCBIT2T-CHM13v2.0
Trmt10a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,849,214 - 137,865,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,849,209 - 137,865,582 (+)EnsemblGRCm39 Ensembl
GRCm383138,143,448 - 138,159,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,143,448 - 138,159,821 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,806,502 - 137,822,785 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,080,925 - 138,097,208 (+)NCBIMGSCv36mm8
Celera3144,554,497 - 144,570,828 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map364.09NCBI
Trmt10a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,342,853 - 229,357,573 (+)NCBIGRCr8
mRatBN7.22226,669,445 - 226,684,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,669,832 - 226,684,151 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2234,408,784 - 234,422,014 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,308,525 - 232,321,755 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,173,200 - 227,186,430 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02243,422,811 - 243,437,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,422,811 - 243,438,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,963,896 - 261,978,618 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,670,051 - 235,683,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2218,825,623 - 218,838,832 (+)NCBICelera
Cytogenetic Map2q43NCBI
Trmt10a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554968,026,569 - 8,037,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554968,021,747 - 8,037,562 (+)NCBIChiLan1.0ChiLan1.0
TRMT10A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2397,630,709 - 97,646,223 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1497,914,440 - 97,929,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0491,970,440 - 91,987,722 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14102,631,501 - 102,648,770 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4102,631,501 - 102,648,454 (-)Ensemblpanpan1.1panPan2
Trmt10a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530120,056,582 - 20,070,786 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365203,400,019 - 3,417,843 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365203,400,029 - 3,413,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT10A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,879,523 - 120,917,433 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,879,067 - 120,917,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,095,032 - 130,133,417 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT10A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1747,689,865 - 47,706,540 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl747,691,555 - 47,701,748 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603726,154,118 - 26,171,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trmt10a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248307,519,851 - 7,530,772 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248307,515,810 - 7,529,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRMT10A
218 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 11 5 9 8 4
Low 5 5 11 6 6 6 1 6 3 8 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005639223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005639224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005639227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000016732   ⟹   ENSCAFP00000015483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3221,555,045 - 21,569,956 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000069013   ⟹   ENSCAFP00000064266
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3221,555,045 - 21,569,732 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082832   ⟹   ENSCAFP00000045635
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3221,555,045 - 21,570,338 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043557   ⟹   ENSCAFP00845034123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3221,773,270 - 21,785,851 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043623   ⟹   ENSCAFP00845034177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3221,774,433 - 21,791,198 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043688   ⟹   ENSCAFP00845034229
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3221,774,441 - 21,791,576 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043750   ⟹   ENSCAFP00845034281
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3221,774,443 - 21,791,204 (-)Ensembl
RefSeq Acc Id: XM_005639223   ⟹   XP_005639280
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,554,096 - 21,570,085 (-)NCBI
Dog10K_Boxer_Tasha3220,326,543 - 20,343,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005639224   ⟹   XP_005639281
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,554,096 - 21,570,078 (-)NCBI
Dog10K_Boxer_Tasha3220,326,565 - 20,343,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005639227   ⟹   XP_005639284
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,554,096 - 21,566,982 (-)NCBI
Dog10K_Boxer_Tasha3220,329,676 - 20,343,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413422   ⟹   XP_022269130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,554,096 - 21,570,085 (-)NCBI
Dog10K_Boxer_Tasha3220,326,543 - 20,343,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413424   ⟹   XP_022269132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,554,096 - 21,570,071 (-)NCBI
Dog10K_Boxer_Tasha3220,326,665 - 20,343,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038444226   ⟹   XP_038300154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03221,774,481 - 21,791,238 (-)NCBI
RefSeq Acc Id: XM_038444227   ⟹   XP_038300155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03221,774,481 - 21,791,238 (-)NCBI
RefSeq Acc Id: XM_038444228   ⟹   XP_038300156
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03221,774,481 - 21,792,045 (-)NCBI
RefSeq Acc Id: XM_038444229   ⟹   XP_038300157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03221,774,481 - 21,791,216 (-)NCBI
RefSeq Acc Id: XM_038444230   ⟹   XP_038300158
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03221,774,481 - 21,791,116 (-)NCBI
RefSeq Acc Id: XM_038444231   ⟹   XP_038300159
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03221,774,481 - 21,788,119 (-)NCBI
RefSeq Acc Id: XM_038518622   ⟹   XP_038374550
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13221,751,224 - 21,767,959 (-)NCBI
RefSeq Acc Id: XM_038518623   ⟹   XP_038374551
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13221,751,224 - 21,767,959 (-)NCBI
RefSeq Acc Id: XM_038518624   ⟹   XP_038374552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13221,751,224 - 21,768,766 (-)NCBI
RefSeq Acc Id: XM_038518625   ⟹   XP_038374553
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13221,751,224 - 21,767,937 (-)NCBI
RefSeq Acc Id: XM_038518626   ⟹   XP_038374554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13221,751,224 - 21,767,837 (-)NCBI
RefSeq Acc Id: XM_038518627   ⟹   XP_038374555
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13221,751,224 - 21,764,853 (-)NCBI
RefSeq Acc Id: XM_038582049   ⟹   XP_038437977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03218,313,614 - 18,330,371 (+)NCBI
RefSeq Acc Id: XM_038582050   ⟹   XP_038437978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03218,313,614 - 18,330,371 (+)NCBI
RefSeq Acc Id: XM_038582051   ⟹   XP_038437979
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03218,312,807 - 18,330,371 (+)NCBI
RefSeq Acc Id: XM_038582052   ⟹   XP_038437980
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03218,313,636 - 18,330,371 (+)NCBI
RefSeq Acc Id: XM_038582053   ⟹   XP_038437981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03218,313,736 - 18,330,371 (+)NCBI
RefSeq Acc Id: XM_038582054   ⟹   XP_038437982
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03218,316,753 - 18,330,371 (+)NCBI
RefSeq Acc Id: XM_038646566   ⟹   XP_038502494
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03221,538,921 - 21,555,443 (-)NCBI
RefSeq Acc Id: XM_038646567   ⟹   XP_038502495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03221,538,921 - 21,555,443 (-)NCBI
RefSeq Acc Id: XM_038646568   ⟹   XP_038502496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03221,538,921 - 21,556,250 (-)NCBI
RefSeq Acc Id: XM_038646569   ⟹   XP_038502497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03221,538,921 - 21,555,418 (-)NCBI
RefSeq Acc Id: XM_038646570   ⟹   XP_038502498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03221,538,921 - 21,555,321 (-)NCBI
RefSeq Acc Id: XM_038646571   ⟹   XP_038502499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03221,538,921 - 21,551,896 (-)NCBI
RefSeq Acc Id: XM_544994   ⟹   XP_544994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,554,096 - 21,570,894 (-)NCBI
Dog10K_Boxer_Tasha3220,325,736 - 20,343,112 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005639280 (Get FASTA)   NCBI Sequence Viewer  
  XP_005639281 (Get FASTA)   NCBI Sequence Viewer  
  XP_005639284 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269130 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269132 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300154 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300155 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300158 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300159 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374550 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374551 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374552 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374553 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374554 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374555 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437977 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437981 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437982 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502494 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502495 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502497 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502498 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502499 (Get FASTA)   NCBI Sequence Viewer  
  XP_544994 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015483.4
  ENSCAFP00000045635.2
  ENSCAFP00000064266.2
  ENSCAFP00030035939.1
  ENSCAFP00030035974.1
  ENSCAFP00030036010.1
  ENSCAFP00040035362.1
  ENSCAFP00040035395.1
  ENSCAFP00040035449.1
  ENSCAFP00845034123.1
  ENSCAFP00845034177
  ENSCAFP00845034177.1
  ENSCAFP00845034229
  ENSCAFP00845034229.1
  ENSCAFP00845034281
  ENSCAFP00845034281.1
RefSeq Acc Id: XP_544994   ⟸   XM_544994
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005639280   ⟸   XM_005639223
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PFM0 (UniProtKB/TrEMBL),   A0A8C0JP50 (UniProtKB/TrEMBL),   A0A8I3PRP6 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005639281   ⟸   XM_005639224
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005639284   ⟸   XM_005639227
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269130   ⟸   XM_022413422
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269132   ⟸   XM_022413424
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000064266   ⟸   ENSCAFT00000069013
RefSeq Acc Id: ENSCAFP00000045635   ⟸   ENSCAFT00000082832
RefSeq Acc Id: ENSCAFP00000015483   ⟸   ENSCAFT00000016732
RefSeq Acc Id: XP_038374552   ⟸   XM_038518624
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038374551   ⟸   XM_038518623
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038374550   ⟸   XM_038518622
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038374553   ⟸   XM_038518625
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038374554   ⟸   XM_038518626
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038374555   ⟸   XM_038518627
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038502496   ⟸   XM_038646568
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038502495   ⟸   XM_038646567
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038502494   ⟸   XM_038646566
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038502497   ⟸   XM_038646569
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038502498   ⟸   XM_038646570
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038502499   ⟸   XM_038646571
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038300156   ⟸   XM_038444228
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300155   ⟸   XM_038444227
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300154   ⟸   XM_038444226
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PFM0 (UniProtKB/TrEMBL),   A0A8C0JP50 (UniProtKB/TrEMBL),   A0A8I3PRP6 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300157   ⟸   XM_038444229
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300158   ⟸   XM_038444230
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300159   ⟸   XM_038444231
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437979   ⟸   XM_038582051
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437977   ⟸   XM_038582049
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JP50 (UniProtKB/TrEMBL),   A0A8C0PFM0 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL),   A0A8I3PRP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437978   ⟸   XM_038582050
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PNI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437980   ⟸   XM_038582052
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437981   ⟸   XM_038582053
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437982   ⟸   XM_038582054
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P744 (UniProtKB/TrEMBL),   A0A8C0QUL0 (UniProtKB/TrEMBL),   A0A8I3PNI7 (UniProtKB/TrEMBL),   A0A8I3S4V4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845034123   ⟸   ENSCAFT00845043557
RefSeq Acc Id: ENSCAFP00845034281   ⟸   ENSCAFT00845043750
RefSeq Acc Id: ENSCAFP00845034177   ⟸   ENSCAFT00845043623
RefSeq Acc Id: ENSCAFP00845034229   ⟸   ENSCAFT00845043688
Promoters
RGD ID:13688722
Promoter ID:EPDNEW_C6792
Type:initiation region
Name:TRMT10A_1
Description:tRNA methyltransferase 10A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13221,570,034 - 21,570,094EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010535 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022413 UniProtKB/TrEMBL
  ENSCAFG00040021837 UniProtKB/TrEMBL
  ENSCAFG00845024675 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016732.5 UniProtKB/TrEMBL
  ENSCAFT00000069013.2 UniProtKB/TrEMBL
  ENSCAFT00000082832.2 UniProtKB/TrEMBL
  ENSCAFT00030041190.1 UniProtKB/TrEMBL
  ENSCAFT00030041228.1 UniProtKB/TrEMBL
  ENSCAFT00030041272.1 UniProtKB/TrEMBL
  ENSCAFT00040040540.1 UniProtKB/TrEMBL
  ENSCAFT00040040579.1 UniProtKB/TrEMBL
  ENSCAFT00040040643.1 UniProtKB/TrEMBL
  ENSCAFT00845043557.1 UniProtKB/TrEMBL
  ENSCAFT00845043623 ENTREZGENE
  ENSCAFT00845043623.1 UniProtKB/TrEMBL
  ENSCAFT00845043688 ENTREZGENE
  ENSCAFT00845043688.1 UniProtKB/TrEMBL
  ENSCAFT00845043750 ENTREZGENE
  ENSCAFT00845043750.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1280.30 UniProtKB/TrEMBL
InterPro MT_TRM10-typ UniProtKB/TrEMBL
  MT_TRM10-typ_sf UniProtKB/TrEMBL
  TRM10/TRM10A UniProtKB/TrEMBL
  tRNA_m1G_MeTrfase_euk UniProtKB/TrEMBL
  tRNA_MeTrfase_TRMD/TRM10 UniProtKB/TrEMBL
KEGG Report cfa:487872 UniProtKB/TrEMBL
NCBI Gene TRMT10A ENTREZGENE
PANTHER PTHR13563 UniProtKB/TrEMBL
  PTHR13563:SF13 UniProtKB/TrEMBL
Pfam tRNA_m1G_MT UniProtKB/TrEMBL
PIRSF tRNA_m1G_mtfrase_met UniProtKB/TrEMBL
PROSITE SAM_MT_TRM10 UniProtKB/TrEMBL
UniProt A0A8C0JP50 ENTREZGENE
  A0A8C0P744 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PFM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PFR0_CANLF UniProtKB/TrEMBL
  A0A8C0QUL0 ENTREZGENE
  A0A8C0Z489_CANLF UniProtKB/TrEMBL
  A0A8I3PNI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PSF0_CANLF UniProtKB/TrEMBL
  A0A8I3S4V4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SFC1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47851 ENTREZGENE