SKA2 (spindle and kinetochore associated complex subunit 2) - Rat Genome Database

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Gene: SKA2 (spindle and kinetochore associated complex subunit 2) Canis lupus familiaris
Analyze
Symbol: SKA2
Name: spindle and kinetochore associated complex subunit 2
RGD ID: 12140289
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (inferred); cell division (inferred); chromosome segregation (inferred); ASSOCIATED WITH Joubert syndrome 1 (ortholog); mulibrey nanism (ortholog); FOUND IN chromosome (inferred); chromosome, centromeric region (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spindle and kinetochore-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,692,089 - 33,728,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,692,302 - 33,728,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,925,938 - 32,962,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,497,651 - 34,533,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,283,420 - 33,319,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,572,430 - 33,608,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,659,101 - 33,695,267 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SKA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,692,089 - 33,728,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,692,302 - 33,728,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,925,938 - 32,962,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,497,651 - 34,533,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,283,420 - 33,319,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,572,430 - 33,608,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,659,101 - 33,695,267 (-)NCBIUU_Cfam_GSD_1.0
SKA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,109,857 - 59,155,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1759,109,857 - 59,155,260 (-)EnsemblGRCh38hg38GRCh38
GRCh371757,187,218 - 57,232,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361754,542,090 - 54,587,582 (-)NCBINCBI36Build 36hg18NCBI36
Build 341754,543,742 - 54,587,343NCBI
Celera1753,649,948 - 53,695,816 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1752,547,893 - 52,593,823 (-)NCBIHuRef
CHM1_11757,252,805 - 57,298,295 (-)NCBICHM1_1
T2T-CHM13v2.01759,977,953 - 60,023,284 (-)NCBIT2T-CHM13v2.0
Ska2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,000,087 - 87,013,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,000,060 - 87,015,461 (+)EnsemblGRCm39 Ensembl
GRCm381187,109,261 - 87,122,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,109,234 - 87,124,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371186,922,763 - 86,936,476 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,925,456 - 86,939,169 (+)NCBIMGSCv36mm8
Celera1196,711,276 - 96,725,039 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.91NCBI
Ska2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,418,707 - 72,436,721 (+)NCBIGRCr8
mRatBN7.21071,921,474 - 71,939,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,921,582 - 71,939,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,532,084 - 76,549,889 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,036,988 - 76,054,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,501,512 - 71,519,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,413,989 - 74,431,922 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,413,989 - 74,431,922 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,668,741 - 75,686,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,383,081 - 75,400,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,397,450 - 75,415,258 (+)NCBI
Celera1070,837,768 - 70,855,580 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ska2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554513,839,978 - 3,862,200 (+)NCBIChiLan1.0ChiLan1.0
SKA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21975,277,226 - 75,322,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11780,090,268 - 80,133,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01753,181,345 - 53,226,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11758,030,137 - 58,076,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1758,030,137 - 58,076,113 (-)Ensemblpanpan1.1panPan2
Ska2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,918,501 - 32,956,260 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364904,119,050 - 4,157,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,396,567 - 35,433,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,396,565 - 35,433,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,074,628 - 37,111,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SKA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,266,937 - 34,306,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,267,161 - 34,304,686 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660775,069,273 - 5,109,026 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SKA2
302 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003639296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038547946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038547947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000042908   ⟹   ENSCAFP00000036014
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl933,692,304 - 33,728,281 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000059503   ⟹   ENSCAFP00000060263
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl933,692,849 - 33,728,281 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000075921   ⟹   ENSCAFP00000049558
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl933,692,302 - 33,728,281 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000084955   ⟹   ENSCAFP00000061797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl933,692,304 - 33,726,305 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000091148   ⟹   ENSCAFP00000057406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl933,692,304 - 33,724,570 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845043094   ⟹   ENSCAFP00845033784
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,712 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845043127   ⟹   ENSCAFP00845033812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,693 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845043154   ⟹   ENSCAFP00845033834
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl934,495,485 - 34,531,716 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845043201   ⟹   ENSCAFP00845033870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl934,495,485 - 34,529,982 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845043258   ⟹   ENSCAFP00845033906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl934,498,207 - 34,533,816 (-)Ensembl
RefSeq Acc Id: XM_003639296   ⟹   XP_003639344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1933,692,089 - 33,728,398 (-)NCBI
Dog10K_Boxer_Tasha932,925,938 - 32,962,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038486125   ⟹   XP_038342053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1933,283,420 - 33,319,561 (-)NCBI
RefSeq Acc Id: XM_038486126   ⟹   XP_038342054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1933,283,420 - 33,319,444 (-)NCBI
RefSeq Acc Id: XM_038547946   ⟹   XP_038403874
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0933,659,101 - 33,695,267 (-)NCBI
RefSeq Acc Id: XM_038547947   ⟹   XP_038403875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0933,659,101 - 33,695,150 (-)NCBI
RefSeq Acc Id: XM_038608123   ⟹   XP_038464051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha932,925,938 - 32,961,918 (-)NCBI
RefSeq Acc Id: XM_038611910   ⟹   XP_038467838
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0933,572,430 - 33,608,584 (-)NCBI
RefSeq Acc Id: XM_038611911   ⟹   XP_038467839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0933,572,430 - 33,608,467 (-)NCBI
RefSeq Acc Id: XM_038677149   ⟹   XP_038533077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0934,497,651 - 34,530,062 (-)NCBI
RefSeq Acc Id: XM_038677150   ⟹   XP_038533078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0934,497,651 - 34,533,814 (-)NCBI
RefSeq Acc Id: XM_038677151   ⟹   XP_038533079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0934,497,651 - 34,533,697 (-)NCBI
RefSeq Acc Id: XP_003639344   ⟸   XM_003639296
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWE8 (UniProtKB/TrEMBL),   A0A8I3PLL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000060263   ⟸   ENSCAFT00000059503
Ensembl Acc Id: ENSCAFP00000061797   ⟸   ENSCAFT00000084955
Ensembl Acc Id: ENSCAFP00000036014   ⟸   ENSCAFT00000042908
Ensembl Acc Id: ENSCAFP00000049558   ⟸   ENSCAFT00000075921
Ensembl Acc Id: ENSCAFP00000057406   ⟸   ENSCAFT00000091148
RefSeq Acc Id: XP_038342053   ⟸   XM_038486125
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038342054   ⟸   XM_038486126
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038467838   ⟸   XM_038611910
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038467839   ⟸   XM_038611911
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038533078   ⟸   XM_038677150
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWE8 (UniProtKB/TrEMBL),   A0A8I3PLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533079   ⟸   XM_038677151
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PHK8 (UniProtKB/TrEMBL),   A0A8P0PFW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533077   ⟸   XM_038677149
- Peptide Label: isoform X3
- UniProtKB: A0A8I3PRK1 (UniProtKB/TrEMBL),   A0A8P0PHF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038464051   ⟸   XM_038608123
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PHK8 (UniProtKB/TrEMBL),   A0A8P0PFW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403874   ⟸   XM_038547946
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWE8 (UniProtKB/TrEMBL),   A0A8I3PLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403875   ⟸   XM_038547947
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PHK8 (UniProtKB/TrEMBL),   A0A8P0PFW5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845033870   ⟸   ENSCAFT00845043201
Ensembl Acc Id: ENSCAFP00845033834   ⟸   ENSCAFT00845043154
Ensembl Acc Id: ENSCAFP00845033812   ⟸   ENSCAFT00845043127
Ensembl Acc Id: ENSCAFP00845033784   ⟸   ENSCAFT00845043094
Ensembl Acc Id: ENSCAFP00845033906   ⟸   ENSCAFT00845043258
Protein Domains
Ska2 N-terminal

Promoters
RGD ID:13684620
Promoter ID:EPDNEW_C2688
Type:multiple initiation site
Name:SKA2_1
Description:spindle and kinetochore associated complex subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1933,728,292 - 33,728,352EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029233 Ensembl
  ENSCAFG00000056779 UniProtKB/TrEMBL
  ENSCAFG00030006065 UniProtKB/TrEMBL
  ENSCAFG00040000941 UniProtKB/TrEMBL
  ENSCAFG00845024401 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000059503.2 UniProtKB/TrEMBL
  ENSCAFT00000096145.1 UniProtKB/TrEMBL
  ENSCAFT00000100392.1 UniProtKB/TrEMBL
  ENSCAFT00000100414.1 UniProtKB/TrEMBL
  ENSCAFT00000108774.1 UniProtKB/TrEMBL
  ENSCAFT00030011164.1 UniProtKB/TrEMBL
  ENSCAFT00030011200.1 UniProtKB/TrEMBL
  ENSCAFT00030011218.1 UniProtKB/TrEMBL
  ENSCAFT00040001697.1 UniProtKB/TrEMBL
  ENSCAFT00040001704.1 UniProtKB/TrEMBL
  ENSCAFT00040001713.1 UniProtKB/TrEMBL
  ENSCAFT00845043094 ENTREZGENE
  ENSCAFT00845043094.1 UniProtKB/TrEMBL
  ENSCAFT00845043127.1 UniProtKB/TrEMBL
  ENSCAFT00845043154 ENTREZGENE
  ENSCAFT00845043154.1 UniProtKB/TrEMBL
  ENSCAFT00845043201 ENTREZGENE
  ENSCAFT00845043201.1 UniProtKB/TrEMBL
  ENSCAFT00845043258.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1380 UniProtKB/TrEMBL
InterPro Ska2 UniProtKB/TrEMBL
  Ska2_N UniProtKB/TrEMBL
KEGG Report cfa:100856241 UniProtKB/TrEMBL
NCBI Gene SKA2 ENTREZGENE
PANTHER PTHR32017 UniProtKB/TrEMBL
  SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
Pfam SKA2 UniProtKB/TrEMBL
UniProt A0A8C0MPE4_CANLF UniProtKB/TrEMBL
  A0A8C0PS39_CANLF UniProtKB/TrEMBL
  A0A8C0PWE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PHK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRM9_CANLF UniProtKB/TrEMBL
  A0A8I3Q1R7_CANLF UniProtKB/TrEMBL
  A0A8P0PFW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PHF3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46194 ENTREZGENE