HSPH1 (heat shock protein family H (Hsp110) member 1) - Rat Genome Database

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Gene: HSPH1 (heat shock protein family H (Hsp110) member 1) Canis lupus familiaris
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Symbol: HSPH1
Name: heat shock protein family H (Hsp110) member 1
RGD ID: 12139731
Description: ENCODES a protein that exhibits adenyl-nucleotide exchange factor activity (inferred); alpha-tubulin binding (inferred); ATP binding (inferred); INVOLVED IN chaperone cofactor-dependent protein refolding (ortholog); negative regulation of apoptotic signaling pathway (ortholog); negative regulation of establishment of protein localization to mitochondrion (ortholog); ASSOCIATED WITH genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); microtubule (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heat shock protein 105 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,972,942 - 8,998,404 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,972,724 - 8,997,893 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,015,922 - 9,040,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,077,842 - 9,102,910 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,077,554 - 9,102,903 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1258,977,129 - 9,002,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0258,985,129 - 9,010,177 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,027,003 - 9,052,061 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:26292766   PMID:30032202  


Genomics

Comparative Map Data
HSPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,972,942 - 8,998,404 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,972,724 - 8,997,893 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,015,922 - 9,040,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,077,842 - 9,102,910 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,077,554 - 9,102,903 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1258,977,129 - 9,002,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0258,985,129 - 9,010,177 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,027,003 - 9,052,061 (+)NCBIUU_Cfam_GSD_1.0
HSPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381331,134,973 - 31,162,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1331,134,973 - 31,162,388 (-)EnsemblGRCh38hg38GRCh38
GRCh371331,709,110 - 31,736,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361330,608,762 - 30,634,117 (-)NCBINCBI36Build 36hg18NCBI36
Build 341330,608,764 - 30,634,117NCBI
Celera1312,778,480 - 12,803,835 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1312,522,150 - 12,547,508 (-)NCBIHuRef
CHM1_11331,678,336 - 31,703,689 (-)NCBICHM1_1
T2T-CHM13v2.01330,358,018 - 30,385,432 (-)NCBIT2T-CHM13v2.0
Hsph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395149,540,308 - 149,562,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5149,537,752 - 149,559,841 (-)EnsemblGRCm39 Ensembl
GRCm385149,616,843 - 149,636,498 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,614,287 - 149,636,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv375150,419,420 - 150,438,890 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,885,224 - 149,904,597 (-)NCBIMGSCv36mm8
Celera5147,617,650 - 147,637,130 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
Hsph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,427,368 - 10,446,602 (+)NCBIGRCr8
mRatBN7.2125,390,916 - 5,410,224 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,390,922 - 5,410,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,069,228 - 6,088,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,692,653 - 6,711,641 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0125,720,173 - 5,739,161 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,322,685 - 6,341,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,322,668 - 6,341,902 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0128,423,546 - 8,442,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4125,794,645 - 5,811,453 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1125,794,644 - 5,811,451 (+)NCBI
Celera127,162,640 - 7,181,902 (+)NCBICelera
Cytogenetic Map12p11NCBI
Hsph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543114,680,498 - 14,706,182 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543114,680,364 - 14,706,182 (+)NCBIChiLan1.0ChiLan1.0
HSPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21430,719,315 - 30,747,378 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11321,826,106 - 21,854,186 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01312,412,826 - 12,438,563 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11330,845,938 - 30,871,455 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1330,846,631 - 30,871,161 (-)Ensemblpanpan1.1panPan2
Hsph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,073,174 - 170,096,453 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,855,694 - 25,879,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,855,873 - 25,879,062 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,733,878 - 7,759,576 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1117,733,874 - 7,759,528 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,585,525 - 7,587,259 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2117,637,260 - 7,661,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,999,471 - 10,026,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl310,000,109 - 10,026,449 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605734,342,051 - 34,369,001 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hsph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247766,988,576 - 7,015,846 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247766,988,591 - 7,013,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HSPH1
158 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 18 2 5 2 6 1 12 8 10 6
Low 4 4 4 1 4 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014107430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000010584   ⟹   ENSCAFP00000009813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl258,972,724 - 8,997,893 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000038999   ⟹   ENSCAFP00000034797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl258,972,724 - 8,997,893 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075809   ⟹   ENSCAFP00000053951
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl258,975,116 - 8,997,893 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845037375   ⟹   ENSCAFP00845029279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl259,077,554 - 9,102,903 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845037495   ⟹   ENSCAFP00845029377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl259,077,554 - 9,102,903 (+)Ensembl
RefSeq Acc Id: XM_038434922   ⟹   XP_038290850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0259,077,845 - 9,102,910 (+)NCBI
RefSeq Acc Id: XM_038434923   ⟹   XP_038290851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0259,077,842 - 9,102,910 (+)NCBI
RefSeq Acc Id: XM_038458339   ⟹   XP_038314267
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha259,015,925 - 9,040,982 (+)NCBI
RefSeq Acc Id: XM_038458340   ⟹   XP_038314268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha259,015,922 - 9,040,982 (+)NCBI
RefSeq Acc Id: XM_038509907   ⟹   XP_038365835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1258,977,132 - 9,002,182 (+)NCBI
RefSeq Acc Id: XM_038509908   ⟹   XP_038365836
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1258,977,129 - 9,002,182 (+)NCBI
RefSeq Acc Id: XM_038573339   ⟹   XP_038429267
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0259,027,006 - 9,052,061 (+)NCBI
RefSeq Acc Id: XM_038573340   ⟹   XP_038429268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0259,027,003 - 9,052,061 (+)NCBI
RefSeq Acc Id: XM_038637632   ⟹   XP_038493560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0258,985,132 - 9,010,177 (+)NCBI
RefSeq Acc Id: XM_038637633   ⟹   XP_038493561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0258,985,129 - 9,010,177 (+)NCBI
RefSeq Acc Id: ENSCAFP00000034797   ⟸   ENSCAFT00000038999
RefSeq Acc Id: ENSCAFP00000009813   ⟸   ENSCAFT00000010584
RefSeq Acc Id: ENSCAFP00000053951   ⟸   ENSCAFT00000075809
RefSeq Acc Id: XP_038365836   ⟸   XM_038509908
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038365835   ⟸   XM_038509907
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038493561   ⟸   XM_038637633
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493560   ⟸   XM_038637632
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038290851   ⟸   XM_038434923
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RRJ1 (UniProtKB/TrEMBL),   A0A8C0LGQ0 (UniProtKB/TrEMBL),   A0A8I3PBN0 (UniProtKB/TrEMBL),   A0A8C0Z7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290850   ⟸   XM_038434922
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LLY7 (UniProtKB/TrEMBL),   A0A8C0PBA6 (UniProtKB/TrEMBL),   A0A8I3PBD9 (UniProtKB/TrEMBL),   A0A8C0Z7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314268   ⟸   XM_038458340
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RRJ1 (UniProtKB/TrEMBL),   A0A8C0LGQ0 (UniProtKB/TrEMBL),   A0A8I3PBN0 (UniProtKB/TrEMBL),   A0A8C0Z7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314267   ⟸   XM_038458339
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LLY7 (UniProtKB/TrEMBL),   A0A8C0PBA6 (UniProtKB/TrEMBL),   A0A8I3PBD9 (UniProtKB/TrEMBL),   A0A8C0Z7H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429268   ⟸   XM_038573340
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LGQ0 (UniProtKB/TrEMBL),   A0A8C0RRJ1 (UniProtKB/TrEMBL),   A0A8C0Z7H4 (UniProtKB/TrEMBL),   A0A8I3PBN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038429267   ⟸   XM_038573339
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LLY7 (UniProtKB/TrEMBL),   A0A8C0PBA6 (UniProtKB/TrEMBL),   A0A8C0Z7H4 (UniProtKB/TrEMBL),   A0A8I3PBD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845029377   ⟸   ENSCAFT00845037495
RefSeq Acc Id: ENSCAFP00845029279   ⟸   ENSCAFT00845037375


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006538 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022690 UniProtKB/TrEMBL
  ENSCAFG00040025877 UniProtKB/TrEMBL
  ENSCAFG00845021081 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010584.6 UniProtKB/TrEMBL
  ENSCAFT00000038999.4 UniProtKB/TrEMBL
  ENSCAFT00030041887.1 UniProtKB/TrEMBL
  ENSCAFT00030041984.1 UniProtKB/TrEMBL
  ENSCAFT00040048401.1 UniProtKB/TrEMBL
  ENSCAFT00040048407.1 UniProtKB/TrEMBL
  ENSCAFT00040048414.1 UniProtKB/TrEMBL
  ENSCAFT00845037375 ENTREZGENE
  ENSCAFT00845037375.1 UniProtKB/TrEMBL
  ENSCAFT00845037495 ENTREZGENE
  ENSCAFT00845037495.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.10 UniProtKB/TrEMBL
  3.30.30.30 UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/TrEMBL
  HSP70_C_sf UniProtKB/TrEMBL
  HSP70_peptide-bd_sf UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/TrEMBL
  HSPH1_NBD UniProtKB/TrEMBL
NCBI Gene HSPH1 ENTREZGENE
PANTHER HEAT SHOCK PROTEIN 105 KDA UniProtKB/TrEMBL
  HSC70CB, ISOFORM G-RELATED UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/TrEMBL
PRINTS HEATSHOCK70 UniProtKB/TrEMBL
PROSITE HSP70_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF100920 UniProtKB/TrEMBL
  SSF100934 UniProtKB/TrEMBL
  SSF53067 UniProtKB/TrEMBL
UniProt A0A8C0LGQ0 ENTREZGENE
  A0A8C0LLY7 ENTREZGENE
  A0A8C0PBA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RRJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z7H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PBD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PBN0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:59083 ENTREZGENE