SPEF1 (sperm flagellar 1) - Rat Genome Database

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Gene: SPEF1 (sperm flagellar 1) Canis lupus familiaris
Analyze
Symbol: SPEF1
Name: sperm flagellar 1
RGD ID: 12137032
Description: ENCODES a protein that exhibits actin binding (inferred); INVOLVED IN microtubule bundle formation (ortholog); ASSOCIATED WITH Inosine Triphosphatase Deficiency (ortholog); FOUND IN cytoplasm (ortholog); motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sperm flagellar protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,572,457 - 17,580,006 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,574,741 - 17,578,439 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,402,172 - 17,408,295 (+)NCBI
ROS_Cfam_1.02417,991,277 - 17,997,400 (+)NCBI
UMICH_Zoey_3.12417,586,132 - 17,593,665 (+)NCBI
UNSW_CanFamBas_1.02417,697,226 - 17,703,348 (+)NCBI
UU_Cfam_GSD_1.02418,024,874 - 18,031,001 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SPEF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,572,457 - 17,580,006 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,574,741 - 17,578,439 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,402,172 - 17,408,295 (+)NCBI
ROS_Cfam_1.02417,991,277 - 17,997,400 (+)NCBI
UMICH_Zoey_3.12417,586,132 - 17,593,665 (+)NCBI
UNSW_CanFamBas_1.02417,697,226 - 17,703,348 (+)NCBI
UU_Cfam_GSD_1.02418,024,874 - 18,031,001 (+)NCBI
SPEF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl203,777,504 - 3,781,448 (-)EnsemblGRCh38hg38GRCh38
GRCh38203,777,504 - 3,781,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37203,758,151 - 3,762,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,706,151 - 3,710,102 (-)NCBINCBI36hg18NCBI36
Build 34203,706,151 - 3,710,061NCBI
Celera203,820,021 - 3,823,972 (-)NCBI
Cytogenetic Map20p13NCBI
HuRef203,706,709 - 3,710,657 (-)NCBIHuRef
CHM1_1203,758,467 - 3,762,413 (-)NCBICHM1_1
Spef1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,012,181 - 131,016,730 (-)NCBIGRCm39mm39
GRCm39 Ensembl2131,012,181 - 131,029,202 (-)Ensembl
GRCm382131,170,261 - 131,174,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,170,261 - 131,187,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,995,997 - 131,000,546 (-)NCBIGRCm37mm9NCBIm37
MGSCv362130,995,997 - 131,000,546 (-)NCBImm8
Celera2132,394,333 - 132,398,883 (-)NCBICelera
Cytogenetic Map2F1NCBI
Spef1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23118,390,659 - 118,396,842 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3118,390,575 - 118,394,531 (-)Ensembl
Rnor_6.03123,712,907 - 123,720,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,714,564 - 123,718,432 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03130,212,953 - 130,219,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,877,343 - 118,881,211 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13118,782,916 - 118,786,719 (-)NCBI
Celera3117,198,821 - 117,202,689 (-)NCBICelera
Cytogenetic Map3q36NCBI
Spef1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,620,593 - 14,626,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,620,593 - 14,626,049 (-)NCBIChiLan1.0ChiLan1.0
SPEF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1203,615,358 - 3,619,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl203,615,358 - 3,619,390 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0203,858,548 - 3,863,150 (-)NCBIMhudiblu_PPA_v0panPan3
Spef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,486,052 - 166,492,305 (+)NCBI
SpeTri2.0NW_00493648514,917,352 - 14,923,669 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPEF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,934,832 - 31,941,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,934,856 - 31,938,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,264,818 - 36,271,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPEF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1234,462,933 - 34,467,575 (-)NCBI
ChlSab1.1 Ensembl234,462,896 - 34,466,923 (-)Ensembl
Vero_WHO_p1.0NW_0236660719,986,035 - 9,990,693 (+)NCBI
Spef1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247414,861,992 - 4,868,261 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8 1
Low 5 4 16 4 6 12 9 6
Below cutoff 1 6 6 2 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005634827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005634828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038433244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038508445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_542915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000010012   ⟹   ENSCAFP00000009287
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2417,574,741 - 17,578,439 (+)Ensembl
RefSeq Acc Id: XM_005634827   ⟹   XP_005634884
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12417,572,457 - 17,578,579 (+)NCBI
Dog10K_Boxer_Tasha2417,402,172 - 17,408,295 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005634828   ⟹   XP_005634885
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12417,572,457 - 17,578,373 (+)NCBI
Dog10K_Boxer_Tasha2417,402,172 - 17,408,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022408987   ⟹   XP_022264695
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12417,572,457 - 17,578,579 (+)NCBI
Dog10K_Boxer_Tasha2417,402,172 - 17,408,295 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038433241   ⟹   XP_038289169
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02417,991,277 - 17,997,400 (+)NCBI
RefSeq Acc Id: XM_038433242   ⟹   XP_038289170
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02417,991,277 - 17,997,400 (+)NCBI
RefSeq Acc Id: XM_038433243   ⟹   XP_038289171
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02417,991,277 - 17,997,183 (+)NCBI
RefSeq Acc Id: XM_038433244   ⟹   XP_038289172
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02417,991,277 - 17,997,400 (+)NCBI
RefSeq Acc Id: XM_038508442   ⟹   XP_038364370
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12417,586,132 - 17,593,665 (+)NCBI
RefSeq Acc Id: XM_038508443   ⟹   XP_038364371
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12417,586,132 - 17,593,665 (+)NCBI
RefSeq Acc Id: XM_038508444   ⟹   XP_038364372
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12417,586,132 - 17,592,234 (+)NCBI
RefSeq Acc Id: XM_038508445   ⟹   XP_038364373
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12417,586,132 - 17,592,186 (+)NCBI
RefSeq Acc Id: XM_038571714   ⟹   XP_038427642
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02418,024,874 - 18,031,001 (+)NCBI
RefSeq Acc Id: XM_038571715   ⟹   XP_038427643
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02418,024,874 - 18,031,001 (+)NCBI
RefSeq Acc Id: XM_038571716   ⟹   XP_038427644
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02418,024,874 - 18,030,784 (+)NCBI
RefSeq Acc Id: XM_038571717   ⟹   XP_038427645
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02418,024,874 - 18,031,001 (+)NCBI
RefSeq Acc Id: XM_038635961   ⟹   XP_038491889
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02417,697,226 - 17,703,348 (+)NCBI
RefSeq Acc Id: XM_038635962   ⟹   XP_038491890
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02417,697,226 - 17,703,348 (+)NCBI
RefSeq Acc Id: XM_038635963   ⟹   XP_038491891
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02417,697,226 - 17,703,131 (+)NCBI
RefSeq Acc Id: XM_038635964   ⟹   XP_038491892
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02417,697,226 - 17,703,348 (+)NCBI
RefSeq Acc Id: XM_542915   ⟹   XP_542915
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12417,572,457 - 17,580,006 (+)NCBI
Dog10K_Boxer_Tasha2417,402,172 - 17,408,295 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_542915   ⟸   XM_542915
- Peptide Label: isoform X3
- UniProtKB: E2R239 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005634884   ⟸   XM_005634827
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005634885   ⟸   XM_005634828
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022264695   ⟸   XM_022408987
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCAFP00000009287   ⟸   ENSCAFT00000010012
RefSeq Acc Id: XP_038364370   ⟸   XM_038508442
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038364371   ⟸   XM_038508443
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038364372   ⟸   XM_038508444
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038364373   ⟸   XM_038508445
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038491892   ⟸   XM_038635964
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038491889   ⟸   XM_038635961
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038491890   ⟸   XM_038635962
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038491891   ⟸   XM_038635963
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038289172   ⟸   XM_038433244
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038289169   ⟸   XM_038433241
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038289170   ⟸   XM_038433242
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038289171   ⟸   XM_038433243
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038427645   ⟸   XM_038571717
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038427642   ⟸   XM_038571714
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038427643   ⟸   XM_038571715
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038427644   ⟸   XM_038571716
- Peptide Label: isoform X12


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006190 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000009287 ENTREZGENE
NCBI Gene SPEF1 ENTREZGENE
UniProt E2R239 ENTREZGENE
VGNC ID VGNC:46730 ENTREZGENE