ARL4D (ADP ribosylation factor like GTPase 4D) - Rat Genome Database

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Gene: ARL4D (ADP ribosylation factor like GTPase 4D) Canis lupus familiaris
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Symbol: ARL4D
Name: ADP ribosylation factor like GTPase 4D
RGD ID: 12136184
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN intracellular protein transport (inferred); vesicle-mediated transport (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 4D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,832,608 - 19,834,593 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,833,192 - 19,833,797 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,221,379 - 19,223,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,524,244 - 20,526,239 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,524,251 - 20,526,227 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,380,729 - 19,382,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,563,605 - 19,565,601 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,705,667 - 19,707,662 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARL4D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,832,608 - 19,834,593 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,833,192 - 19,833,797 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,221,379 - 19,223,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,524,244 - 20,526,239 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,524,251 - 20,526,227 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,380,729 - 19,382,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,563,605 - 19,565,601 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,705,667 - 19,707,662 (-)NCBIUU_Cfam_GSD_1.0
ARL4D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,398,993 - 43,401,137 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,398,993 - 43,401,137 (+)EnsemblGRCh38hg38GRCh38
GRCh371741,476,361 - 41,478,505 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,831,879 - 38,834,030 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,831,884 - 38,834,029NCBI
Celera1738,186,886 - 38,189,037 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1737,237,511 - 37,239,661 (+)NCBIHuRef
CHM1_11741,711,850 - 41,714,001 (+)NCBICHM1_1
T2T-CHM13v2.01744,248,757 - 44,250,901 (+)NCBIT2T-CHM13v2.0
Arl4d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,556,367 - 101,558,658 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,556,367 - 101,558,658 (+)EnsemblGRCm39 Ensembl
GRCm3811101,665,541 - 101,667,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,665,541 - 101,667,832 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,526,855 - 101,529,146 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,482,722 - 101,483,918 (+)NCBIMGSCv36mm8
Celera11113,367,184 - 113,369,477 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.48NCBI
Arl4d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81087,092,276 - 87,103,079 (+)NCBIGRCr8
mRatBN7.21086,592,054 - 86,602,843 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,595,661 - 86,602,836 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,636,986 - 91,639,147 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01091,112,622 - 91,114,782 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,505,914 - 86,508,075 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,577,556 - 89,580,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,578,212 - 89,580,368 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,374,883 - 89,377,684 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,700,469 - 90,702,625 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,714,863 - 90,716,399 (+)NCBI
Celera1085,323,430 - 85,325,586 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Arl4d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,912,440 - 16,913,039 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,912,424 - 16,913,447 (+)NCBIChiLan1.0ChiLan1.0
ARL4D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21921,505,009 - 21,508,429 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,469,369 - 23,472,787 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01713,994,346 - 13,996,327 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,240,398 - 14,242,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,241,192 - 14,241,797 (-)Ensemblpanpan1.1panPan2
Arl4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,186,042 - 19,188,034 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,611 - 8,452 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,583 - 8,552 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL4D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,648,207 - 19,651,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,649,379 - 19,651,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,790,811 - 19,792,763 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL4D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,010,825 - 63,012,787 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,011,426 - 63,012,031 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607733,779,797 - 33,782,022 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ARL4D
14 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 6 8
Low 1 5 17 4 5 4 1 6 8 6
Below cutoff 5 2 1 2 5 2

Sequence


RefSeq Acc Id: ENSCAFT00000023142   ⟹   ENSCAFP00000021486
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl919,833,192 - 19,833,797 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019447   ⟹   ENSCAFP00845015206
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl920,524,251 - 20,526,227 (-)Ensembl
RefSeq Acc Id: XM_038487592   ⟹   XP_038343520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1919,380,729 - 19,382,724 (-)NCBI
RefSeq Acc Id: XM_038546098   ⟹   XP_038402026
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0919,705,667 - 19,707,662 (-)NCBI
RefSeq Acc Id: XM_038610122   ⟹   XP_038466050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0919,563,605 - 19,565,601 (-)NCBI
RefSeq Acc Id: XM_038675187   ⟹   XP_038531115
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0920,524,244 - 20,526,239 (-)NCBI
RefSeq Acc Id: XM_548073   ⟹   XP_548073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1919,832,608 - 19,834,593 (-)NCBI
Dog10K_Boxer_Tasha919,221,379 - 19,223,374 (-)NCBI
Sequence:
RefSeq Acc Id: XP_548073   ⟸   XM_548073
- UniProtKB: A0A8C0T404 (UniProtKB/TrEMBL),   A0A8C0KGG0 (UniProtKB/TrEMBL),   A0A8I3NH73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000021486   ⟸   ENSCAFT00000023142
RefSeq Acc Id: XP_038343520   ⟸   XM_038487592
RefSeq Acc Id: XP_038466050   ⟸   XM_038610122
RefSeq Acc Id: XP_038531115   ⟸   XM_038675187
- UniProtKB: A0A8C0T404 (UniProtKB/TrEMBL),   A0A8C0KGG0 (UniProtKB/TrEMBL),   A0A8I3NH73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402026   ⟸   XM_038546098
- UniProtKB: A0A8C0KGG0 (UniProtKB/TrEMBL),   A0A8C0T404 (UniProtKB/TrEMBL),   A0A8I3NH73 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845015206   ⟸   ENSCAFT00845019447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014581 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002273 UniProtKB/TrEMBL
  ENSCAFG00040018881 UniProtKB/TrEMBL
  ENSCAFG00845011006 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023142.3 UniProtKB/TrEMBL
  ENSCAFT00030004169.1 UniProtKB/TrEMBL
  ENSCAFT00040034915.1 UniProtKB/TrEMBL
  ENSCAFT00845019447 ENTREZGENE
  ENSCAFT00845019447.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
KEGG Report cfa:490950 UniProtKB/TrEMBL
NCBI Gene ARL4D ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 4D UniProtKB/TrEMBL
  PTHR11711 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0KGG0 ENTREZGENE
  A0A8C0T404 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NH73 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38114 ENTREZGENE