SREK1 (splicing regulatory glutamic acid and lysine rich protein 1) - Rat Genome Database

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Gene: SREK1 (splicing regulatory glutamic acid and lysine rich protein 1) Canis lupus familiaris
Analyze
Symbol: SREK1
Name: splicing regulatory glutamic acid and lysine rich protein 1
RGD ID: 12135076
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear speck (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SFRS12; splicing factor, arginine/serine-rich 12; splicing regulatory glutamine/lysine-rich protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,761,727 - 51,807,124 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,761,763 - 51,802,694 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl252,252,970 - 52,296,028 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:37756605  


Genomics

Comparative Map Data
SREK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,761,727 - 51,807,124 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,761,763 - 51,802,694 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl252,252,970 - 52,296,028 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBIUU_Cfam_GSD_1.0
SREK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38566,144,300 - 66,183,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl566,139,971 - 66,183,615 (+)EnsemblGRCh38hg38GRCh38
GRCh37565,440,128 - 65,479,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36565,475,841 - 65,512,472 (+)NCBINCBI36Build 36hg18NCBI36
Build 34565,489,710 - 65,512,395NCBI
Celera562,438,135 - 62,474,766 (+)NCBICelera
Cytogenetic Map5q12.3NCBI
HuRef562,397,593 - 62,436,975 (+)NCBIHuRef
CHM1_1565,440,155 - 65,479,577 (+)NCBICHM1_1
T2T-CHM13v2.0566,965,512 - 67,004,823 (+)NCBIT2T-CHM13v2.0
Srek1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913103,873,291 - 103,911,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13103,875,856 - 103,911,116 (-)EnsemblGRCm39 Ensembl
GRCm3813103,738,565 - 103,774,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13103,739,348 - 103,774,608 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713104,531,695 - 104,554,662 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613104,861,997 - 104,884,964 (-)NCBIMGSCv36mm8
Celera13108,143,950 - 108,166,676 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.16NCBI
Srek1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8236,583,412 - 36,618,978 (-)NCBIGRCr8
mRatBN7.2234,849,548 - 34,885,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl234,852,458 - 34,884,972 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx241,974,185 - 41,993,119 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,032,876 - 40,051,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0234,874,333 - 34,893,277 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0233,806,035 - 33,841,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl233,809,807 - 33,841,499 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0252,935,275 - 52,970,575 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4234,690,996 - 34,710,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1234,611,364 - 34,630,501 (+)NCBI
Celera230,833,959 - 30,852,836 (-)NCBICelera
Cytogenetic Map2q13NCBI
Srek1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554462,908,587 - 2,947,312 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554462,908,587 - 2,946,966 (-)NCBIChiLan1.0ChiLan1.0
SREK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2447,745,359 - 47,783,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1545,899,214 - 45,937,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0547,808,086 - 47,866,971 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1549,382,815 - 49,420,912 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl549,382,798 - 49,420,912 (-)Ensemblpanpan1.1panPan2
Srek1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213194,110,789 - 194,153,448 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364803,050,063 - 3,090,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364803,050,063 - 3,089,947 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SREK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1644,578,783 - 44,620,094 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11644,578,531 - 44,621,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21647,921,725 - 47,956,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SREK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1462,338,417 - 62,376,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604910,988,753 - 11,027,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srek1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248153,645,968 - 3,682,836 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248153,646,520 - 3,682,844 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SREK1
359 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 22 6 6 6 6 2 12 5 10 6
Low 1 4 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005617452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014108794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000044884   ⟹   ENSCAFP00000039045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl251,761,763 - 51,802,694 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845019764   ⟹   ENSCAFP00845015470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl252,252,970 - 52,286,148 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845019833   ⟹   ENSCAFP00845015527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl252,252,997 - 52,296,028 (+)Ensembl
RefSeq Acc Id: XM_005617452   ⟹   XP_005617509
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,761,727 - 51,807,124 (+)NCBI
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005617453   ⟹   XP_005617510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,761,727 - 51,807,124 (+)NCBI
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005617455   ⟹   XP_005617512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,771,172 - 51,807,124 (+)NCBI
Dog10K_Boxer_Tasha248,725,671 - 48,761,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410107   ⟹   XP_022265815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,761,727 - 51,807,124 (+)NCBI
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410113   ⟹   XP_022265821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,783,006 - 51,807,124 (+)NCBI
Dog10K_Boxer_Tasha248,737,313 - 48,761,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038469946   ⟹   XP_038325874
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBI
RefSeq Acc Id: XM_038469947   ⟹   XP_038325875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBI
RefSeq Acc Id: XM_038469948   ⟹   XP_038325876
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBI
RefSeq Acc Id: XM_038469949   ⟹   XP_038325877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1249,317,712 - 49,363,064 (+)NCBI
RefSeq Acc Id: XM_038469950   ⟹   XP_038325878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1249,327,159 - 49,363,064 (+)NCBI
RefSeq Acc Id: XM_038469951   ⟹   XP_038325879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1249,338,801 - 49,363,064 (+)NCBI
RefSeq Acc Id: XM_038530754   ⟹   XP_038386682
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBI
RefSeq Acc Id: XM_038530755   ⟹   XP_038386683
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBI
RefSeq Acc Id: XM_038530756   ⟹   XP_038386684
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBI
RefSeq Acc Id: XM_038530757   ⟹   XP_038386685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0250,993,761 - 51,039,212 (+)NCBI
RefSeq Acc Id: XM_038530758   ⟹   XP_038386686
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0251,003,201 - 51,039,212 (+)NCBI
RefSeq Acc Id: XM_038530759   ⟹   XP_038386687
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0251,014,867 - 51,039,212 (+)NCBI
RefSeq Acc Id: XM_038594978   ⟹   XP_038450906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBI
RefSeq Acc Id: XM_038594979   ⟹   XP_038450907
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBI
RefSeq Acc Id: XM_038594980   ⟹   XP_038450908
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBI
RefSeq Acc Id: XM_038594981   ⟹   XP_038450909
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0250,100,815 - 50,146,240 (+)NCBI
RefSeq Acc Id: XM_038594982   ⟹   XP_038450910
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0250,110,250 - 50,146,240 (+)NCBI
RefSeq Acc Id: XM_038594983   ⟹   XP_038450911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0250,121,913 - 50,146,240 (+)NCBI
RefSeq Acc Id: XM_038659052   ⟹   XP_038514980
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBI
RefSeq Acc Id: XM_038659053   ⟹   XP_038514981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBI
RefSeq Acc Id: XM_038659055   ⟹   XP_038514983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBI
RefSeq Acc Id: XM_038659056   ⟹   XP_038514984
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0252,253,007 - 52,298,423 (+)NCBI
RefSeq Acc Id: XM_038659057   ⟹   XP_038514985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0252,262,453 - 52,298,423 (+)NCBI
RefSeq Acc Id: XM_038659058   ⟹   XP_038514986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0252,274,098 - 52,298,423 (+)NCBI
RefSeq Acc Id: XM_544361   ⟹   XP_544361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,761,728 - 51,807,124 (+)NCBI
Dog10K_Boxer_Tasha248,716,220 - 48,761,604 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005617509 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617510 (Get FASTA)   NCBI Sequence Viewer  
  XP_005617512 (Get FASTA)   NCBI Sequence Viewer  
  XP_022265815 (Get FASTA)   NCBI Sequence Viewer  
  XP_022265821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038325879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386682 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386683 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386684 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386686 (Get FASTA)   NCBI Sequence Viewer  
  XP_038386687 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450906 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450907 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450908 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450909 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450910 (Get FASTA)   NCBI Sequence Viewer  
  XP_038450911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514981 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514983 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514984 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514985 (Get FASTA)   NCBI Sequence Viewer  
  XP_038514986 (Get FASTA)   NCBI Sequence Viewer  
  XP_544361 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000039045.1
  ENSCAFP00000073031.1
  ENSCAFP00030004563.1
  ENSCAFP00030004573.1
  ENSCAFP00040005294.1
  ENSCAFP00040005303.1
  ENSCAFP00845015470.1
  ENSCAFP00845015527
  ENSCAFP00845015527.1
RefSeq Acc Id: XP_005617510   ⟸   XM_005617453
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005617509   ⟸   XM_005617452
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_544361   ⟸   XM_544361
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RBA8 (UniProtKB/TrEMBL),   A0A8I3RWC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617512   ⟸   XM_005617455
- Peptide Label: isoform X5
- UniProtKB: E2R749 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022265815   ⟸   XM_022410107
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022265821   ⟸   XM_022410113
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCAFP00000039045   ⟸   ENSCAFT00000044884
RefSeq Acc Id: XP_038325874   ⟸   XM_038469946
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038325875   ⟸   XM_038469947
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038325876   ⟸   XM_038469948
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038325877   ⟸   XM_038469949
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038325878   ⟸   XM_038469950
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038325879   ⟸   XM_038469951
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038450906   ⟸   XM_038594978
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038450907   ⟸   XM_038594979
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038450908   ⟸   XM_038594980
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038450909   ⟸   XM_038594981
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038450910   ⟸   XM_038594982
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038450911   ⟸   XM_038594983
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038514980   ⟸   XM_038659052
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038514981   ⟸   XM_038659053
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038514983   ⟸   XM_038659055
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RBA8 (UniProtKB/TrEMBL),   A0A8I3RWC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038514984   ⟸   XM_038659056
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038514985   ⟸   XM_038659057
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038514986   ⟸   XM_038659058
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038386682   ⟸   XM_038530754
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038386683   ⟸   XM_038530755
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038386684   ⟸   XM_038530756
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RBA8 (UniProtKB/TrEMBL),   A0A8I3RWC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038386685   ⟸   XM_038530757
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038386686   ⟸   XM_038530758
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038386687   ⟸   XM_038530759
- Peptide Label: isoform X6
RefSeq Acc Id: ENSCAFP00845015527   ⟸   ENSCAFT00845019833
RefSeq Acc Id: ENSCAFP00845015470   ⟸   ENSCAFT00845019764
Protein Domains
RRM

Promoters
RGD ID:13682487
Promoter ID:EPDNEW_C556
Type:initiation region
Name:SREK1_1
Description:splicing regulatory glutamic acid and lysine rich protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1251,761,611 - 51,761,671EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007560 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002757 UniProtKB/TrEMBL
  ENSCAFG00040003223 UniProtKB/TrEMBL
  ENSCAFG00845011144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044884.4 UniProtKB/TrEMBL
  ENSCAFT00000106865.1 UniProtKB/TrEMBL
  ENSCAFT00030005135.1 UniProtKB/TrEMBL
  ENSCAFT00030005149.1 UniProtKB/TrEMBL
  ENSCAFT00040006130.1 UniProtKB/TrEMBL
  ENSCAFT00040006141.1 UniProtKB/TrEMBL
  ENSCAFT00845019764.1 UniProtKB/TrEMBL
  ENSCAFT00845019833 ENTREZGENE
  ENSCAFT00845019833.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SREK1_RRM2 UniProtKB/TrEMBL
NCBI Gene SREK1 ENTREZGENE
PANTHER SERINE/ARGININE-RICH SPLICING FACTOR UniProtKB/TrEMBL
  SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C0M4I8_CANLF UniProtKB/TrEMBL
  A0A8C0RBA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NE14_CANLF UniProtKB/TrEMBL
  A0A8I3RWC4 ENTREZGENE, UniProtKB/TrEMBL
  E2R749 ENTREZGENE
VGNC ID VGNC:46797 ENTREZGENE