RELL1 (RELT like 1) - Rat Genome Database

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Gene: RELL1 (RELT like 1) Canis lupus familiaris
Analyze
Symbol: RELL1
Name: RELT like 1
RGD ID: 12134721
Description: INVOLVED IN positive regulation of p38MAPK cascade (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RELT-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1374,493,133 - 74,555,976 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl374,489,571 - 74,554,086 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha377,040,360 - 77,103,166 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0375,274,403 - 75,336,739 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1374,540,353 - 74,603,128 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0374,687,392 - 74,750,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,065,069 - 75,128,089 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RELL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1374,493,133 - 74,555,976 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl374,489,571 - 74,554,086 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha377,040,360 - 77,103,166 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0375,274,403 - 75,336,739 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1374,540,353 - 74,603,128 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0374,687,392 - 74,750,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,065,069 - 75,128,089 (+)NCBIUU_Cfam_GSD_1.0
RELL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38437,586,304 - 37,686,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl437,590,800 - 37,686,376 (-)EnsemblGRCh38hg38GRCh38
GRCh37437,592,426 - 37,687,998 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36437,268,817 - 37,364,394 (-)NCBINCBI36Build 36hg18NCBI36
Celera438,031,897 - 38,127,507 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef436,916,955 - 37,012,394 (-)NCBIHuRef
CHM1_1437,591,419 - 37,687,547 (-)NCBICHM1_1
T2T-CHM13v2.0437,559,941 - 37,655,575 (-)NCBIT2T-CHM13v2.0
Rell1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39564,047,296 - 64,126,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl564,066,240 - 64,126,240 (-)EnsemblGRCm39 Ensembl
GRCm38563,889,337 - 63,969,020 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl563,908,897 - 63,968,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv37564,300,137 - 64,360,136 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36564,188,667 - 64,248,001 (-)NCBIMGSCv36mm8
Celera561,200,867 - 61,260,171 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map532.8NCBI
Rell1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81444,672,121 - 44,732,081 (+)NCBIGRCr8
mRatBN7.21444,318,640 - 44,378,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1444,303,009 - 44,378,500 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1444,681,475 - 44,730,263 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01445,981,404 - 46,030,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01444,461,557 - 44,510,341 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01445,982,244 - 46,041,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1445,982,244 - 46,041,866 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01445,787,180 - 45,847,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41447,179,973 - 47,229,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11447,185,966 - 47,200,193 (-)NCBI
Celera1443,460,106 - 43,515,377 (+)NCBICelera
Cytogenetic Map14p11NCBI
Rell1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554439,460,682 - 9,526,986 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554439,461,570 - 9,526,986 (+)NCBIChiLan1.0ChiLan1.0
RELL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2337,799,868 - 37,873,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1437,992,302 - 38,066,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0431,939,962 - 32,013,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1437,798,632 - 37,869,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl437,798,632 - 37,869,421 (-)Ensemblpanpan1.1panPan2
Rell1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528540,602,899 - 40,670,798 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364825,625,349 - 5,695,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364825,626,563 - 5,695,320 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RELL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl829,118,514 - 29,190,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1829,118,511 - 29,190,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2830,533,593 - 30,568,840 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RELL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12712,602,526 - 12,673,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2712,602,540 - 12,676,013 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604759,017,806 - 59,097,774 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rell1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248406,207,394 - 6,268,205 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248406,207,560 - 6,268,193 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RELL1
814 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 6 6 6 2 6 10 6
Low 1 5 16 6 6 6 10 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000025800   ⟹   ENSCAFP00000023960
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl374,493,205 - 74,554,086 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075408   ⟹   ENSCAFP00000046829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl374,493,867 - 74,554,086 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000085204   ⟹   ENSCAFP00000046399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl374,489,571 - 74,554,086 (+)Ensembl
RefSeq Acc Id: XM_014112639   ⟹   XP_013968114
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1374,494,614 - 74,555,976 (+)NCBI
Dog10K_Boxer_Tasha377,041,836 - 77,103,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038472523   ⟹   XP_038328451
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1374,540,353 - 74,603,128 (+)NCBI
RefSeq Acc Id: XM_038472524   ⟹   XP_038328452
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1374,541,812 - 74,603,128 (+)NCBI
RefSeq Acc Id: XM_038533506   ⟹   XP_038389434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0375,065,069 - 75,128,089 (+)NCBI
RefSeq Acc Id: XM_038597805   ⟹   XP_038453733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0374,687,392 - 74,750,146 (+)NCBI
RefSeq Acc Id: XM_038660609   ⟹   XP_038516537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0375,274,403 - 75,336,739 (+)NCBI
RefSeq Acc Id: XM_536264   ⟹   XP_536264
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1374,493,135 - 74,555,976 (+)NCBI
Dog10K_Boxer_Tasha377,040,360 - 77,103,166 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_536264   ⟸   XM_536264
- Peptide Label: isoform X6
- UniProtKB: A0A8C0RBX4 (UniProtKB/TrEMBL),   A0A8P0SKQ8 (UniProtKB/TrEMBL),   A0A8C0LT98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013968114   ⟸   XM_014112639
- Peptide Label: isoform X7
- UniProtKB: A0A8C0PKS8 (UniProtKB/TrEMBL),   A0A8P0SZE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000023960   ⟸   ENSCAFT00000025800
RefSeq Acc Id: ENSCAFP00000046829   ⟸   ENSCAFT00000075408
RefSeq Acc Id: ENSCAFP00000046399   ⟸   ENSCAFT00000085204
RefSeq Acc Id: XP_038328451   ⟸   XM_038472523
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038328452   ⟸   XM_038472524
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038453733   ⟸   XM_038597805
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038516537   ⟸   XM_038660609
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389434   ⟸   XM_038533506
- Peptide Label: isoform X5
- UniProtKB: A0A8C0LT98 (UniProtKB/TrEMBL),   A0A8C0RBX4 (UniProtKB/TrEMBL),   A0A8P0SKQ8 (UniProtKB/TrEMBL)

Promoters
RGD ID:13682835
Promoter ID:EPDNEW_C904
Type:multiple initiation site
Name:RELL1_1
Description:RELT like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1374,493,159 - 74,493,219EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016265 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003570 UniProtKB/TrEMBL
  ENSCAFG00040000382 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025800.5 UniProtKB/TrEMBL
  ENSCAFT00000085204.2 UniProtKB/TrEMBL
  ENSCAFT00030006668.1 UniProtKB/TrEMBL
  ENSCAFT00040000637.1 UniProtKB/TrEMBL
  ENSCAFT00040000643.1 UniProtKB/TrEMBL
  ENSCAFT00040000661.1 UniProtKB/TrEMBL
  ENSCAFT00040000668.1 UniProtKB/TrEMBL
InterPro RELL1 UniProtKB/TrEMBL
  TNF_rcpt_RELT UniProtKB/TrEMBL
KEGG Report cfa:479117 UniProtKB/TrEMBL
NCBI Gene RELL1 ENTREZGENE
PANTHER PTHR31037 UniProtKB/TrEMBL
  RELT-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam RELT UniProtKB/TrEMBL
UniProt A0A8C0LT98 ENTREZGENE
  A0A8C0PKL9_CANLF UniProtKB/TrEMBL
  A0A8C0PKQ4_CANLF UniProtKB/TrEMBL
  A0A8C0PKS8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PUB5_CANLF UniProtKB/TrEMBL
  A0A8C0RBX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SKQ8 ENTREZGENE
  A0A8P0SZE7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0SKQ8 UniProtKB/TrEMBL
VGNC ID VGNC:45468 ENTREZGENE