LGI3 (leucine rich repeat LGI family member 3)

Gene: LGI3 (leucine rich repeat LGI family member 3) Canis lupus familiaris

Analyze

Symbol:

LGI3

Name:

leucine rich repeat LGI family member 3

RGD ID:

12133096

Description:

INVOLVED IN regulation of exocytosis (inferred); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER WITH MUSCLE TONE ABNORMALITIES AND DISTAL SKELETAL DEFECTS (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); juxtaparanode region of axon (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat LGI family member 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	35,097,464 - 35,105,930 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	35,097,566 - 35,105,940 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,687,040 - 35,695,518 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	35,308,828 - 35,317,292 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	35,308,929 - 35,316,773 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	35,254,281 - 35,262,751 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	35,108,844 - 35,117,307 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	35,264,308 - 35,272,778 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Conotruncal Cardiac Defects (ISO)

genetic disease (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH MUSCLE TONE ABNORMALITIES AND DISTAL SKELETAL DEFECTS (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of exocytosis (IEA)

Cellular Component

extracellular region (IEA)

extracellular space (IEA)

juxtaparanode region of axon (IEA)

synaptic vesicle (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LGI3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	35,097,464 - 35,105,930 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	35,097,566 - 35,105,940 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,687,040 - 35,695,518 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	35,308,828 - 35,317,292 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	35,308,929 - 35,316,773 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	35,254,281 - 35,262,751 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	35,108,844 - 35,117,307 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	35,264,308 - 35,272,778 (+)	NCBI		UU_Cfam_GSD_1.0

LGI3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,146,830 - 22,156,806 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,146,830 - 22,157,084 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	22,004,343 - 22,014,319 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,060,288 - 22,070,289 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	22,060,289 - 22,070,289	NCBI
Celera	8	20,966,267 - 20,976,328 (-)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	20,546,619 - 20,556,646 (-)	NCBI		HuRef
CHM1_1	8	22,206,009 - 22,216,003 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,420,778 - 22,430,751 (-)	NCBI		T2T-CHM13v2.0

Lgi3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,765,982 - 70,775,764 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,768,125 - 70,775,764 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	70,528,547 - 70,538,324 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	70,530,685 - 70,538,324 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	70,930,628 - 70,938,131 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	69,265,950 - 69,273,402 (+)	NCBI		MGSCv36	mm8
Celera	14	68,072,371 - 68,079,876 (+)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.32	NCBI

Lgi3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	52,015,317 - 52,022,445 (+)	NCBI		GRCr8
mRatBN7.2	15	45,605,611 - 45,612,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,605,611 - 45,612,739 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	49,723,477 - 49,730,605 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,834,982 - 50,842,110 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,694,274 - 47,701,402 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	52,220,578 - 52,227,706 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,220,578 - 52,227,706 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,944,095 - 55,951,223 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,932,145 - 50,939,273 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,948,080 - 50,955,053 (+)	NCBI
Celera	15	45,284,005 - 45,291,134 (+)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

Lgi3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	45,634,237 - 45,644,172 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	45,634,237 - 45,644,172 (-)	NCBI	ChiLan1.0	ChiLan1.0

LGI3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	40,648,656 - 40,658,653 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,373,854 - 16,383,840 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,391,765 - 21,401,770 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,330,815 - 18,340,403 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,330,815 - 18,340,403 (-)	Ensembl	panpan1.1		panPan2

Lgi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	12,596,621 - 12,603,899 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	5,966,577 - 5,973,954 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	5,966,617 - 5,973,898 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LGI3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	6,419,592 - 6,428,563 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	6,419,100 - 6,429,266 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	6,856,466 - 6,866,639 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LGI3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,216,373 - 20,226,744 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,216,372 - 20,225,599 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	22,009,472 - 22,019,709 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lgi3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	17,726,018 - 17,737,740 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	17,729,290 - 17,737,677 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LGI3
68 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium									6		5
Low	4	5	19	5	6	5	6	2	6		5	6
Below cutoff	1		3	1		1		4		8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038435480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038510423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038573869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038638189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000015312 ⟹ ENSCAFP00000014169

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	35,097,566 - 35,105,940 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000073441 ⟹ ENSCAFP00000048456

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	35,097,566 - 35,105,940 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845045668 ⟹ ENSCAFP00845035832

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	35,308,929 - 35,316,773 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845045757 ⟹ ENSCAFP00845035911

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	35,308,929 - 35,316,773 (+)	Ensembl

RefSeq Acc Id:

XM_038435480 ⟹ XP_038291408

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	35,308,828 - 35,317,292 (+)	NCBI

RefSeq Acc Id:

XM_038510423 ⟹ XP_038366351

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	25	35,254,281 - 35,262,751 (+)	NCBI

RefSeq Acc Id:

XM_038573869 ⟹ XP_038429797

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	25	35,264,308 - 35,272,778 (+)	NCBI

RefSeq Acc Id:

XM_038638189 ⟹ XP_038494117

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	25	35,108,844 - 35,117,307 (+)	NCBI

RefSeq Acc Id:

XM_543254 ⟹ XP_543254

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	35,097,464 - 35,105,930 (+)	NCBI
Dog10K_Boxer_Tasha	25	35,687,040 - 35,695,518 (+)	NCBI

Sequence:

show sequence

CAGCGGCGGCGGCGGGCGGCGGGGAGGCGCAGCCGGCGGGGTGGCCGAGAGCCGCGGGGCGGGG
GCCGCGGCCGGTGGCCCGGGGCAGAGCTTGCAGGCAGCATGGCGGGGCCGCGCGCCGGCCGGGG
CTCCGGGCTCGGGCTCGGGCTCGGGCTCGGGCTGCTGGCGCTGTCCGCGCTCGGCTGCTGTCTG
ATGCTGCAAGTCGGCGCCAAGAGGCCCCCCAAGACGCCCCCCTGCCCGCCCAGCTGCTCCTGCA
CCAGGGACACCGCCTTCTGCGTGGACTCTAAGGCAGTGCCCAGGAACCTGCCCTCCGAGGTCAT
CTCTCTGACGCTGGTGAATGCTGCCTTCTCTGAGATCCAGGATGGAGCGTTTTCCCACCTGCCA
CTGCTGCAGTTCCTGTTACTCAACTCCAACAAGTTTACTCTGATTGGAGACAACGCTTTCACAG
GACTGTCACACCTCCAGTACCTCTTCATTGAGAATAATGACATCTGGGCACTCTCCAAGTTCAC
CTTCAGAGGACTCAAGTCTTTGACACACCTATCACTGGCCAACAATAACCTGCAGACACTGCCT
AGAGACATCTTTCGGCCCCTGGACATCCTGAGTGACTTGGACCTGCGGGGCAACTCGCTCAACT
GCGACTGCAAGGTGAAGTGGCTGGTGGAGTGGCTGGCACACACCAACACCACTGTGGCCCCCAT
CTATTGCGCCAGCCCTCCTCGCTTCCAAGAGCACAAGGTGCAGGACCTGCCACTGCGGGAATTC
GACTGCATCACCACGGATTTCGTGCTGTACCAGACCCTGCCTTTCCCAGCAGTGTCAGCCGAGC
CCTTCCTTTACTCCAGTGACCTCTATTTGGCTCTGGCCCAGCCAGGTGCCAGTGCTTGCAGTGT
TCTCAAGTGGGACTATGTTGAACGGCAGCTTCGAGATTATGATAGAATCCCAGCCCCCTCCGCG
GTGCACTGCAAGCCAATGGTGGTAGACAGCCAGCTGTACGTGATTGTGGCCCAGCTGTTTGGTG
GCTCTTACATTTACCACTGGGACCCCAACACCACGCGCTTCACCAAGCTGCAGGATATCGACCC
ACAGCGTGTGCGCAAGCCCAACGACCTAGAGGCTTTCCGCATCGACGGTGACTGGTACTTTGCC
GTGGCCGACAGCTCCAAGGCGGGGGCCACCAGCCTCTACCGCTGGCACCAGAATGGCTTCTATT
CCCACCAGGCCCTGCACGCCTGGCACCGAGACACCGACCTGGAGTTTGTGGATGGTGAGGGCAA
ACCACGGTTGATTGTGTCCAGTAGCTCGCAGGCACCTGTGATCTATCAGTGGAGCCGCACCCAG
AAGCAGTTTGTGGCTCAGGGTGAGGTGAGCCAGGTGCCCGATGCCCAGGCTGTGAAACACTTCC
GTGCCGGGCGCGACAGCTACCTGTGCCTCAGCCGTTACATCGGCGACTCTAAGATCCTGCGCTG
GGAGGGCACCCGCTTCTCCGAGGTGCAGGCCCTGCCCTCCCGGGGCTCCCTGGCCATGCAGCCC
TTCCTCGTGGGTGGCCGCCGCTACCTGGCGCTGGGGAGTGATTTCTCCTTCACGCAGATCTACC
AGTGGGATGAGGGGCGCCAAAAGTTCGTGCGGTTCCAGGAGCTGGCTGTGCAGGCCCCACGGGC
ATTCTGCTACATGCCTGCGGGGGACGCCCAGCTGCTCCTGGCCCCCAGCTTCAAGGGACAGACG
CTCGTGTACCGGCACGTAGTGGTGGACCTCAGTGCCTAGAGCGGTGCCGAGTCCTCTGGGCGCT
CGGGTGGCCCCTGGAGGCTAGCATAGAAGTCTCTGTGTGAGCAGCATGTGTGCCCGTGTGAAGA
CACATGTAACCAACCTGCATACGTGCCCTCACAGATGCCCCCCGTGCCCCCCCGTGAGCATGGG
CACACACTGTGGACTAGCCCAGGGGAGCCGCTTACCGTAGTTGTGACAGCATGAAGACTTGTAT
ATGCACCAGGCAAGCCTGCAGCCCTGTGCCCTCTCATGTGTGGGCACATGTCGGTCCCACACCC
CTACCTGAAGGCCCCCTGCCCCGTGATCTGCCACTTTCCCCATGCTCTGGCCCCAGGGGAAGAG
TGGGAGGGGCAGAGCCACCCCCTCCTCCTGTTTTTCGGCTTATCTTCTCAGCTCTCTGGCCTCT
CCTTGTCGGTGCTCCAGGTGTGTGTTTATCTACTCACGCTCCGCATTGCAGCCCACGGCCACAT
CCTTCACCCTACTGGGTTCACTCACCCATGCTGTCCTCCTTGTGCATGCACCCAGGGATGCTGA
TGGACACCCTCAGTTACACATGCACACGCACCTGTTGACATTCCCACTTCTGTGTGCATATGTC
CAGATTCAGTGTGGCCTAAGGACGGTCTCCTTCATCACCTTGACTCTTTTCTTGGAGAAGGCAC
ACAGCACCTGCCCTCCTCTGCTCATCCCTGGTGTGCCTACCTTGTAGCTGATAAGGATGGGAAT
GGTGGTGCCTGCCTCTGGGTACCAGCTTGGTCTCCTGGGGGCAAAGCCCCTCTGCCTAAAGCAA
TAACAAAGCAGACCCTGAGTTCTTCTGGGGGCTCTCTCTGTTCTCACTGGAGTTTCCTGCTCTG
AGCCTGAATCCAGCTCACCTGTGGACAGGAGACCACCTGGAAAAAAGCCTTTCAGCTCTTCTTT
ACTGTAGCTGCCCCATCTTCAGACCACCCATTGGTTCAGCCCCACCTCTGGGCTGTGGTGGGTT
CAAGAGCTGGCCACTCCGGGGGCTCTGCAAGTACCTGGGCCAACTGGGTGGGTGCCAAGAGTGG
AATGGGGCTAGAGAGCATCTTAGGGATCCTAGGGCTTCTCCGATCCACAGAGGCAGGCCGCAGG
CATTGCCTTTTATTGCAAGCTGAGCGATAGAGGGGGTGAGGGTCCGGTAGAAGCAGCACCTGGG
AGCCAAGCTTCTGCTGCCCTCTGCTGTATGCTGGGAATAGACAGCTCTGAGCTGCAAGGCCAGT
GGAGAAGGCATGGGGTGGGGAAATTTCTCTGTGTCCAGACTGTGTGAGGGCCTACTGGTGGCAG
GATGCCCAGGAGCACTCAGGGGCAATGTGATGATTCACTGCTGCAAATAAAAATTTCCCACCCC
ATTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038291408	(Get FASTA)	NCBI Sequence Viewer
	XP_038366351	(Get FASTA)	NCBI Sequence Viewer
	XP_038429797	(Get FASTA)	NCBI Sequence Viewer
	XP_038494117	(Get FASTA)	NCBI Sequence Viewer
	XP_543254	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000014169.4
	ENSCAFP00000048456.1
	ENSCAFP00030029014.1
	ENSCAFP00030029054.1
	ENSCAFP00040037704.1
	ENSCAFP00040037722.1
	ENSCAFP00845035832
	ENSCAFP00845035832.1
	ENSCAFP00845035911.1

RefSeq Acc Id:

XP_543254 ⟸ XM_543254

- UniProtKB:

A0A8C0TMM9 (UniProtKB/TrEMBL), A0A8I3PW83 (UniProtKB/TrEMBL), A0A8P0NBV2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGPRAGRGSGLGLGLGLGLLALSALGCCLMLQVGAKRPPKTPPCPPSCSCTRDTAFCVDSKAV
PRNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENN
DIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNSLNCDCKVKWLVEWLA
HTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLPFPAVSAEPFLYSSDLYLALA
QPGASACSVLKWDYVERQLRDYDRIPAPSAVHCKPMVVDSQLYVIVAQLFGGSYIYHWDPNTTR
FTKLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTD
LEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVSQVPDAQAVKHFRAGRDSYLCLSRY
IGDSKILRWEGTRFSEVQALPSRGSLAMQPFLVGGRRYLALGSDFSFTQIYQWDEGRQKFVRFQ
ELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA

hide sequence

RefSeq Acc Id:

ENSCAFP00000014169 ⟸ ENSCAFT00000015312

RefSeq Acc Id:

ENSCAFP00000048456 ⟸ ENSCAFT00000073441

RefSeq Acc Id:

XP_038366351 ⟸ XM_038510423

RefSeq Acc Id:

XP_038494117 ⟸ XM_038638189

RefSeq Acc Id:	XP_038291408 ⟸ XM_038435480
- UniProtKB:	A0A8C0KVA2 (UniProtKB/TrEMBL), A0A8C0TMM9 (UniProtKB/TrEMBL), A0A8I3PW83 (UniProtKB/TrEMBL), A0A8P0NBV2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038429797 ⟸ XM_038573869
- UniProtKB:	A0A8C0TMM9 (UniProtKB/TrEMBL), A0A8I3PW83 (UniProtKB/TrEMBL), A0A8P0NBV2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845035832 ⟸ ENSCAFT00845045668

RefSeq Acc Id:

ENSCAFP00845035911 ⟸ ENSCAFT00845045757

Protein Domains

LRRCT

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000009637	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030017935	UniProtKB/TrEMBL
	ENSCAFG00040023211	UniProtKB/TrEMBL
	ENSCAFG00845025793	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000015312.5	UniProtKB/TrEMBL
	ENSCAFT00000073441.2	UniProtKB/TrEMBL
	ENSCAFT00030033255.1	UniProtKB/TrEMBL
	ENSCAFT00030033296.1	UniProtKB/TrEMBL
	ENSCAFT00040043215.1	UniProtKB/TrEMBL
	ENSCAFT00040043239.1	UniProtKB/TrEMBL
	ENSCAFT00845045668	ENTREZGENE
	ENSCAFT00845045668.1	UniProtKB/TrEMBL
	ENSCAFT00845045757.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	EAR	UniProtKB/TrEMBL
	EPTP	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	Quinoprot_gluc/sorb_DH	UniProtKB/TrEMBL
NCBI Gene	LGI3	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT LGI FAMILY MEMBER 3	UniProtKB/TrEMBL
	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	EPTP	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PROSITE	EAR	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF50952	UniProtKB/TrEMBL
UniProt	A0A8C0KVA2	ENTREZGENE
	A0A8C0NLL2_CANLF	UniProtKB/TrEMBL
	A0A8C0TMM9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PW83	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S5L9_CANLF	UniProtKB/TrEMBL
	A0A8P0NBV2	ENTREZGENE
UniProt Secondary	A0A8P0NBV2	UniProtKB/TrEMBL
	A0A8P0T1C9	UniProtKB/TrEMBL
VGNC ID	VGNC:42652	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM