CCDC149 (coiled-coil domain containing 149) - Rat Genome Database

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Gene: CCDC149 (coiled-coil domain containing 149) Canis lupus familiaris
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Symbol: CCDC149
Name: coiled-coil domain containing 149
RGD ID: 12130414
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 149
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,309,141 - 85,375,958 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl385,273,916 - 85,373,659 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha387,786,773 - 87,889,791 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0386,248,090 - 86,351,110 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl386,247,630 - 86,348,811 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1385,381,336 - 85,483,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0385,486,378 - 85,589,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,872,327 - 85,974,985 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CCDC149
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,309,141 - 85,375,958 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl385,273,916 - 85,373,659 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha387,786,773 - 87,889,791 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0386,248,090 - 86,351,110 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl386,247,630 - 86,348,811 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1385,381,336 - 85,483,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0385,486,378 - 85,589,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,872,327 - 85,974,985 (+)NCBIUU_Cfam_GSD_1.0
CCDC149
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38424,803,514 - 24,980,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl424,803,514 - 24,980,204 (-)EnsemblGRCh38hg38GRCh38
GRCh37424,805,136 - 24,981,826 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36424,437,679 - 24,590,924 (-)NCBINCBI36Build 36hg18NCBI36
Celera425,257,207 - 25,430,723 (-)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef424,150,242 - 24,322,736 (-)NCBIHuRef
CHM1_1424,807,112 - 24,981,193 (-)NCBICHM1_1
T2T-CHM13v2.0424,785,445 - 24,962,121 (-)NCBIT2T-CHM13v2.0
Ccdc149
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39552,531,993 - 52,629,018 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl552,531,993 - 52,628,863 (-)EnsemblGRCm39 Ensembl
GRCm38552,374,651 - 52,471,578 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl552,374,651 - 52,471,521 (-)EnsemblGRCm38mm10GRCm38
MGSCv37552,767,037 - 52,862,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36552,765,890 - 52,766,880 (-)NCBIMGSCv36mm8
Celera549,744,352 - 49,840,057 (-)NCBICelera
Cytogenetic Map5C1NCBI
cM Map527.94NCBI
Ccdc149
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,722,567 - 62,817,778 (+)NCBIGRCr8
mRatBN7.21458,509,583 - 58,605,017 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1458,509,811 - 58,604,696 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01460,857,924 - 60,953,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,857,989 - 60,952,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,971,449 - 61,066,225 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41463,279,907 - 63,382,130 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1457,607,651 - 57,702,630 (+)NCBICelera
Cytogenetic Map14q11NCBI
Ccdc149
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955480188,705 - 250,200 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955480156,614 - 252,370 (+)NCBIChiLan1.0ChiLan1.0
CCDC149
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2325,050,513 - 25,161,392 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1425,247,290 - 25,356,666 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0419,206,568 - 19,313,342 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1424,491,644 - 24,597,728 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl424,491,644 - 24,580,468 (-)Ensemblpanpan1.1panPan2
Ccdc149
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528550,870,514 - 50,933,000 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364774,572,206 - 4,634,666 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC149
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl818,807,739 - 18,914,080 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1818,807,730 - 18,914,123 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2819,168,736 - 19,303,263 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC149
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12725,444,831 - 25,549,161 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2725,444,896 - 25,551,752 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604771,962,878 - 72,068,761 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc149
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247557,415,445 - 7,531,710 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC149
1087 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 11 12 10
Low 3 5 11 6 6 6 6 6 8 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022417264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000026138   ⟹   ENSCAFP00000024269
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl385,294,058 - 85,373,659 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066420   ⟹   ENSCAFP00000066399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl385,273,916 - 85,373,659 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000080936   ⟹   ENSCAFP00000049703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl385,294,058 - 85,373,659 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013518   ⟹   ENSCAFP00845010491
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl386,247,630 - 86,348,811 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013566   ⟹   ENSCAFP00845010532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl386,247,630 - 86,348,811 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013620   ⟹   ENSCAFP00845010574
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl386,247,630 - 86,348,470 (+)Ensembl
RefSeq Acc Id: XM_038472575   ⟹   XP_038328503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1385,381,336 - 85,483,958 (+)NCBI
RefSeq Acc Id: XM_038472576   ⟹   XP_038328504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1385,381,341 - 85,483,958 (+)NCBI
RefSeq Acc Id: XM_038482119   ⟹   XP_038338047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha387,786,773 - 87,889,791 (+)NCBI
RefSeq Acc Id: XM_038482128   ⟹   XP_038338056
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha387,786,778 - 87,889,791 (+)NCBI
RefSeq Acc Id: XM_038533561   ⟹   XP_038389489
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0385,872,327 - 85,974,985 (+)NCBI
RefSeq Acc Id: XM_038533562   ⟹   XP_038389490
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0385,872,332 - 85,974,985 (+)NCBI
RefSeq Acc Id: XM_038597843   ⟹   XP_038453771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0385,486,378 - 85,589,460 (+)NCBI
RefSeq Acc Id: XM_038597844   ⟹   XP_038453772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0385,486,383 - 85,589,460 (+)NCBI
RefSeq Acc Id: XM_038662065   ⟹   XP_038517993
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,248,090 - 86,351,110 (+)NCBI
RefSeq Acc Id: XM_038662066   ⟹   XP_038517994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,248,095 - 86,351,110 (+)NCBI
RefSeq Acc Id: ENSCAFP00000066399   ⟸   ENSCAFT00000066420
RefSeq Acc Id: ENSCAFP00000049703   ⟸   ENSCAFT00000080936
RefSeq Acc Id: ENSCAFP00000024269   ⟸   ENSCAFT00000026138
RefSeq Acc Id: XP_038328503   ⟸   XM_038472575
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328504   ⟸   XM_038472576
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038453771   ⟸   XM_038597843
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453772   ⟸   XM_038597844
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038517993   ⟸   XM_038662065
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M327 (UniProtKB/TrEMBL),   A0A8I3N4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517994   ⟸   XM_038662066
- Peptide Label: isoform X2
- UniProtKB: A0A8C0M501 (UniProtKB/TrEMBL),   A0A8I3RVJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038338047   ⟸   XM_038482119
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M327 (UniProtKB/TrEMBL),   A0A8I3N4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038338056   ⟸   XM_038482128
- Peptide Label: isoform X2
- UniProtKB: A0A8C0M501 (UniProtKB/TrEMBL),   A0A8I3RVJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389489   ⟸   XM_038533561
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389490   ⟸   XM_038533562
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845010491   ⟸   ENSCAFT00845013518
RefSeq Acc Id: ENSCAFP00845010532   ⟸   ENSCAFT00845013566
RefSeq Acc Id: ENSCAFP00845010574   ⟸   ENSCAFT00845013620


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016494 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002088 UniProtKB/TrEMBL
  ENSCAFG00040001783 UniProtKB/TrEMBL
  ENSCAFG00845007671 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026138.5 UniProtKB/TrEMBL
  ENSCAFT00000080936.2 UniProtKB/TrEMBL
  ENSCAFT00000105380.1 UniProtKB/TrEMBL
  ENSCAFT00030003814.1 UniProtKB/TrEMBL
  ENSCAFT00030003855.1 UniProtKB/TrEMBL
  ENSCAFT00030003886.1 UniProtKB/TrEMBL
  ENSCAFT00040003364.1 UniProtKB/TrEMBL
  ENSCAFT00845013518 ENTREZGENE
  ENSCAFT00845013518.1 UniProtKB/TrEMBL
  ENSCAFT00845013566 ENTREZGENE
  ENSCAFT00845013566.1 UniProtKB/TrEMBL
  ENSCAFT00845013620.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
InterPro Coiled-coil_dom-contain_pr_149 UniProtKB/TrEMBL
NCBI Gene CCDC149 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 149 UniProtKB/TrEMBL
  PTHR21682 UniProtKB/TrEMBL
Pfam DUF2353 UniProtKB/TrEMBL
UniProt A0A8C0LY69_CANLF UniProtKB/TrEMBL
  A0A8C0M327 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M501 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N2L3_CANLF UniProtKB/TrEMBL
  A0A8I3N4H0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RVJ2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:49816 ENTREZGENE