Gene: CCDC149 (coiled-coil domain containing 149) Canis lupus familiaris |
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Analyze |
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Symbol: |
CCDC149 |
Name: |
coiled-coil domain containing 149 |
RGD ID: |
12130414 |
Description: |
ASSOCIATED WITH genetic disease (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
coiled-coil domain-containing protein 149 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
CanFam3.1 - Dog CanFam3.1 Assembly |
Position: |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 3 | 85,309,141 - 85,375,958 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 3 | 85,273,916 - 85,373,659 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 3 | 87,786,773 - 87,889,791 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 3 | 86,248,090 - 86,351,110 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 3 | 86,247,630 - 86,348,811 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 3 | 85,381,336 - 85,483,958 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 3 | 85,486,378 - 85,589,460 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 3 | 85,872,327 - 85,974,985 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
CCDC149 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 3 | 85,309,141 - 85,375,958 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 3 | 85,273,916 - 85,373,659 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 3 | 87,786,773 - 87,889,791 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 3 | 86,248,090 - 86,351,110 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 3 | 86,247,630 - 86,348,811 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 3 | 85,381,336 - 85,483,958 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 3 | 85,486,378 - 85,589,460 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 3 | 85,872,327 - 85,974,985 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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CCDC149 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 24,803,514 - 24,980,204 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 24,803,514 - 24,980,204 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 24,805,136 - 24,981,826 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 24,437,679 - 24,590,924 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 25,257,207 - 25,430,723 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | p15.2 | NCBI | | | | | HuRef | 4 | 24,150,242 - 24,322,736 (-) | NCBI | | HuRef | | | CHM1_1 | 4 | 24,807,112 - 24,981,193 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 24,785,445 - 24,962,121 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Ccdc149 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 52,531,993 - 52,629,018 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 52,531,993 - 52,628,863 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 52,374,651 - 52,471,578 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 52,374,651 - 52,471,521 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 52,767,037 - 52,862,776 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 52,765,890 - 52,766,880 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 49,744,352 - 49,840,057 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | C1 | NCBI | | | | | cM Map | 5 | 27.94 | NCBI | | | | |
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Ccdc149 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 14 | 62,722,567 - 62,817,778 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 58,509,583 - 58,605,017 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 58,509,811 - 58,604,696 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 14 | 60,857,924 - 60,953,504 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 60,857,989 - 60,952,088 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 60,971,449 - 61,066,225 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 14 | 63,279,907 - 63,382,130 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 14 | 57,607,651 - 57,702,630 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | q11 | NCBI | | | | |
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Ccdc149 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955480 | 188,705 - 250,200 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955480 | 156,614 - 252,370 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CCDC149 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 25,050,513 - 25,161,392 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 25,247,290 - 25,356,666 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 19,206,568 - 19,313,342 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 24,491,644 - 24,597,728 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 24,491,644 - 24,580,468 (-) | Ensembl | panpan1.1 | | panPan2 | |
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Ccdc149 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CCDC149 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 8 | 18,807,739 - 18,914,080 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 18,807,730 - 18,914,123 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 19,168,736 - 19,303,263 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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CCDC149 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 27 | 25,444,831 - 25,549,161 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 27 | 25,444,896 - 25,551,752 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666047 | 71,962,878 - 72,068,761 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ccdc149 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
reproductive system |
respiratory system |
adipose tissue |
High |
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Medium |
2
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11
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12
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10
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Low |
3
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5
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11
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6
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6
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6
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6
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6
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8
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6
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Below cutoff |
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Sequence
RefSeq Acc Id: |
ENSCAFT00000026138 ⟹ ENSCAFP00000024269 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 3 | 85,294,058 - 85,373,659 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00000066420 ⟹ ENSCAFP00000066399 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 3 | 85,273,916 - 85,373,659 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00000080936 ⟹ ENSCAFP00000049703 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 3 | 85,294,058 - 85,373,659 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00845013518 ⟹ ENSCAFP00845010491 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 Ensembl | 3 | 86,247,630 - 86,348,811 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00845013566 ⟹ ENSCAFP00845010532 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 Ensembl | 3 | 86,247,630 - 86,348,811 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00845013620 ⟹ ENSCAFP00845010574 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 Ensembl | 3 | 86,247,630 - 86,348,470 (+) | Ensembl |
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RefSeq Acc Id: |
XM_038472575 ⟹ XP_038328503 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 3 | 85,381,336 - 85,483,958 (+) | NCBI |
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RefSeq Acc Id: |
XM_038472576 ⟹ XP_038328504 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 3 | 85,381,341 - 85,483,958 (+) | NCBI |
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RefSeq Acc Id: |
XM_038482119 ⟹ XP_038338047 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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Dog10K_Boxer_Tasha | 3 | 87,786,773 - 87,889,791 (+) | NCBI |
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RefSeq Acc Id: |
XM_038482128 ⟹ XP_038338056 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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Dog10K_Boxer_Tasha | 3 | 87,786,778 - 87,889,791 (+) | NCBI |
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RefSeq Acc Id: |
XM_038533561 ⟹ XP_038389489 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 3 | 85,872,327 - 85,974,985 (+) | NCBI |
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RefSeq Acc Id: |
XM_038533562 ⟹ XP_038389490 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 3 | 85,872,332 - 85,974,985 (+) | NCBI |
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RefSeq Acc Id: |
XM_038597843 ⟹ XP_038453771 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 3 | 85,486,378 - 85,589,460 (+) | NCBI |
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RefSeq Acc Id: |
XM_038597844 ⟹ XP_038453772 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 3 | 85,486,383 - 85,589,460 (+) | NCBI |
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RefSeq Acc Id: |
XM_038662065 ⟹ XP_038517993 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 3 | 86,248,090 - 86,351,110 (+) | NCBI |
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RefSeq Acc Id: |
XM_038662066 ⟹ XP_038517994 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 3 | 86,248,095 - 86,351,110 (+) | NCBI |
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RefSeq Acc Id: |
ENSCAFP00000066399 ⟸ ENSCAFT00000066420 |
RefSeq Acc Id: |
ENSCAFP00000049703 ⟸ ENSCAFT00000080936 |
RefSeq Acc Id: |
ENSCAFP00000024269 ⟸ ENSCAFT00000026138 |
RefSeq Acc Id: |
XP_038328503 ⟸ XM_038472575 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038328504 ⟸ XM_038472576 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038453771 ⟸ XM_038597843 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038453772 ⟸ XM_038597844 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038517993 ⟸ XM_038662065 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8C0M327 (UniProtKB/TrEMBL), A0A8I3N4H0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038517994 ⟸ XM_038662066 |
- Peptide Label: |
isoform X2 |
- UniProtKB: |
A0A8C0M501 (UniProtKB/TrEMBL), A0A8I3RVJ2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038338047 ⟸ XM_038482119 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8C0M327 (UniProtKB/TrEMBL), A0A8I3N4H0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038338056 ⟸ XM_038482128 |
- Peptide Label: |
isoform X2 |
- UniProtKB: |
A0A8C0M501 (UniProtKB/TrEMBL), A0A8I3RVJ2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038389489 ⟸ XM_038533561 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038389490 ⟸ XM_038533562 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
ENSCAFP00845010491 ⟸ ENSCAFT00845013518 |
RefSeq Acc Id: |
ENSCAFP00845010532 ⟸ ENSCAFT00845013566 |
RefSeq Acc Id: |
ENSCAFP00845010574 ⟸ ENSCAFT00845013620 |
Additional Information
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