PRICKLE2 (prickle planar cell polarity protein 2) - Rat Genome Database

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Gene: PRICKLE2 (prickle planar cell polarity protein 2) Canis lupus familiaris
Analyze
Symbol: PRICKLE2
Name: prickle planar cell polarity protein 2
RGD ID: 12127558
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN embryonic brain development (ortholog); establishment or maintenance of epithelial cell apical/basal polarity (ortholog); maintenance of postsynaptic density structure (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder (ortholog); benign epilepsy with centrotemporal spikes (ortholog); epilepsy (ortholog); FOUND IN apicolateral plasma membrane (ortholog); glutamatergic synapse (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prickle-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12026,810,167 - 27,131,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2026,809,958 - 27,220,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2026,734,821 - 27,056,251 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02026,851,053 - 27,167,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2026,850,761 - 27,339,903 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12026,544,737 - 26,865,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02026,896,407 - 27,215,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02026,956,497 - 27,278,807 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PRICKLE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12026,810,167 - 27,131,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2026,809,958 - 27,220,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2026,734,821 - 27,056,251 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02026,851,053 - 27,167,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2026,850,761 - 27,339,903 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12026,544,737 - 26,865,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02026,896,407 - 27,215,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02026,956,497 - 27,278,807 (+)NCBIUU_Cfam_GSD_1.0
PRICKLE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38364,092,236 - 64,268,173 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl364,092,236 - 64,445,476 (-)EnsemblGRCh38hg38GRCh38
GRCh37364,077,912 - 64,253,849 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36364,054,587 - 64,186,171 (-)NCBINCBI36Build 36hg18NCBI36
Build 34364,054,590 - 64,186,171NCBI
Celera364,096,295 - 64,227,889 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef364,176,650 - 64,308,225 (-)NCBIHuRef
CHM1_1364,030,867 - 64,162,475 (-)NCBICHM1_1
T2T-CHM13v2.0364,135,847 - 64,311,751 (-)NCBIT2T-CHM13v2.0
Prickle2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,347,876 - 92,683,233 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl692,347,889 - 92,683,136 (-)EnsemblGRCm39 Ensembl
GRCm38692,370,891 - 92,706,334 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,370,908 - 92,706,155 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,320,886 - 92,656,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36692,341,450 - 92,671,688 (-)NCBIMGSCv36mm8
Celera694,262,178 - 94,597,798 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map641.05NCBI
Prickle2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84126,426,767 - 126,771,986 (-)NCBIGRCr8
mRatBN7.24124,869,655 - 125,214,862 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,869,552 - 125,214,824 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4130,337,414 - 130,682,587 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04126,111,840 - 126,457,005 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04124,736,392 - 125,081,567 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04124,238,167 - 124,584,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4124,238,167 - 124,338,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04188,680,318 - 189,025,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,571,461 - 126,920,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14126,820,833 - 126,938,959 (-)NCBI
Celera4113,786,958 - 114,131,482 (-)NCBICelera
Cytogenetic Map4q34NCBI
Prickle2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555171,501,706 - 1,802,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555171,501,322 - 1,806,996 (+)NCBIChiLan1.0ChiLan1.0
PRICKLE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2264,013,389 - 64,368,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1364,018,177 - 64,372,142 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0363,995,566 - 64,347,679 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1365,374,853 - 65,723,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,377,760 - 65,723,662 (-)Ensemblpanpan1.1panPan2
Prickle2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118163,613,553 - 163,945,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366372,003,209 - 2,333,278 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366372,225,400 - 2,299,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRICKLE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1345,620,368 - 45,968,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11345,620,372 - 45,968,295 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21350,094,626 - 50,263,960 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRICKLE2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12225,128,160 - 25,481,385 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2225,133,352 - 25,303,131 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041141,333,892 - 141,686,115 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prickle2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248881,537,138 - 1,821,215 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248881,537,080 - 1,825,955 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRICKLE2
4310 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 6 12 8 5
Low 2 5 10 5 6 3 5 6
Below cutoff 6 6 1 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005632348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005632349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005632350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005632351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005632352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000010961   ⟹   ENSCAFP00000010158
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2026,851,550 - 27,127,620 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000011009   ⟹   ENSCAFP00000010204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2027,206,442 - 27,220,057 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000061554   ⟹   ENSCAFP00000050046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2026,809,958 - 27,127,620 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063620   ⟹   ENSCAFP00000050220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2026,851,550 - 27,220,057 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063899   ⟹   ENSCAFP00000050310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2027,206,442 - 27,219,955 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000065051   ⟹   ENSCAFP00000050325
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2026,898,899 - 27,127,620 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023870   ⟹   ENSCAFP00845018746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2026,850,761 - 27,339,903 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023884   ⟹   ENSCAFP00845018756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2027,015,969 - 27,219,833 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023902   ⟹   ENSCAFP00845018773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2027,056,454 - 27,339,903 (+)Ensembl
RefSeq Acc Id: XM_005632348   ⟹   XP_005632405
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12026,810,167 - 27,131,864 (+)NCBI
Dog10K_Boxer_Tasha2026,734,821 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005632349   ⟹   XP_005632406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12026,810,410 - 27,131,864 (+)NCBI
Dog10K_Boxer_Tasha2026,735,055 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005632350   ⟹   XP_005632407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12026,975,012 - 27,131,864 (+)NCBI
Dog10K_Boxer_Tasha2026,899,415 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005632351   ⟹   XP_005632408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12026,810,410 - 27,131,864 (+)NCBI
Dog10K_Boxer_Tasha2026,735,055 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005632352   ⟹   XP_005632409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12027,015,640 - 27,131,855 (+)NCBI
Dog10K_Boxer_Tasha2026,938,786 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406483   ⟹   XP_022262191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12026,810,410 - 27,131,864 (+)NCBI
Dog10K_Boxer_Tasha2026,735,055 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406484   ⟹   XP_022262192
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12026,839,866 - 27,131,864 (+)NCBI
Dog10K_Boxer_Tasha2026,764,495 - 27,056,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038427243   ⟹   XP_038283171
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02026,851,053 - 27,167,684 (+)NCBI
RefSeq Acc Id: XM_038455004   ⟹   XP_038310932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2026,764,844 - 27,056,251 (+)NCBI
RefSeq Acc Id: XM_038455005   ⟹   XP_038310933
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2026,734,897 - 27,056,251 (+)NCBI
RefSeq Acc Id: XM_038455006   ⟹   XP_038310934
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2026,764,495 - 27,056,251 (+)NCBI
RefSeq Acc Id: XM_038455007   ⟹   XP_038310935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2026,998,554 - 27,056,251 (+)NCBI
RefSeq Acc Id: XM_038455008   ⟹   XP_038310936
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2026,998,791 - 27,056,251 (+)NCBI
RefSeq Acc Id: XM_038502970   ⟹   XP_038358898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12026,544,737 - 26,865,949 (+)NCBI
RefSeq Acc Id: XM_038565922   ⟹   XP_038421850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,956,497 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565923   ⟹   XP_038421851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,956,731 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565924   ⟹   XP_038421852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,956,731 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565925   ⟹   XP_038421853
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,956,731 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565926   ⟹   XP_038421854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,986,193 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565927   ⟹   XP_038421855
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,986,541 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565928   ⟹   XP_038421856
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02027,121,789 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565929   ⟹   XP_038421857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,956,573 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565930   ⟹   XP_038421858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02027,161,187 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565931   ⟹   XP_038421859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02026,986,193 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565932   ⟹   XP_038421860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02027,221,020 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038565933   ⟹   XP_038421861
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02027,221,257 - 27,278,807 (+)NCBI
RefSeq Acc Id: XM_038630057   ⟹   XP_038485985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,896,407 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630058   ⟹   XP_038485986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,896,639 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630059   ⟹   XP_038485987
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,896,639 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630060   ⟹   XP_038485988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,896,639 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630061   ⟹   XP_038485989
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,926,060 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630062   ⟹   XP_038485990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,926,408 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630063   ⟹   XP_038485991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02027,059,475 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630064   ⟹   XP_038485992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,896,483 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630065   ⟹   XP_038485993
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02027,099,579 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630066   ⟹   XP_038485994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02026,926,060 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630067   ⟹   XP_038485995
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02027,158,184 - 27,215,887 (+)NCBI
RefSeq Acc Id: XM_038630068   ⟹   XP_038485996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02027,158,421 - 27,215,887 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005632405 (Get FASTA)   NCBI Sequence Viewer  
  XP_005632406 (Get FASTA)   NCBI Sequence Viewer  
  XP_005632407 (Get FASTA)   NCBI Sequence Viewer  
  XP_005632408 (Get FASTA)   NCBI Sequence Viewer  
  XP_005632409 (Get FASTA)   NCBI Sequence Viewer  
  XP_022262191 (Get FASTA)   NCBI Sequence Viewer  
  XP_022262192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283171 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310932 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310933 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310934 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310935 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310936 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358898 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421850 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421851 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421852 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421854 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421855 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421856 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421857 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421858 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421859 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421861 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485985 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485987 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485988 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485989 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485991 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485992 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485995 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485996 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000010158.5
  ENSCAFP00000050046.1
  ENSCAFP00000050325.2
  ENSCAFP00030021553.1
  ENSCAFP00040024265.1
  ENSCAFP00845018746.1
  ENSCAFP00845018756.1
  ENSCAFP00845018773.1
Reference Protein Sequences
RefSeq Acc Id: XP_005632405   ⟸   XM_005632348
- Peptide Label: isoform X11
- UniProtKB: A0A8C0N575 (UniProtKB/TrEMBL),   A0A8I3NE98 (UniProtKB/TrEMBL),   A0A8C0SNA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632408   ⟸   XM_005632351
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632406   ⟸   XM_005632349
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632407   ⟸   XM_005632350
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632409   ⟸   XM_005632352
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022262191   ⟸   XM_022406483
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022262192   ⟸   XM_022406484
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000010204   ⟸   ENSCAFT00000011009
RefSeq Acc Id: ENSCAFP00000050310   ⟸   ENSCAFT00000063899
RefSeq Acc Id: ENSCAFP00000050220   ⟸   ENSCAFT00000063620
RefSeq Acc Id: ENSCAFP00000010158   ⟸   ENSCAFT00000010961
RefSeq Acc Id: ENSCAFP00000050325   ⟸   ENSCAFT00000065051
RefSeq Acc Id: ENSCAFP00000050046   ⟸   ENSCAFT00000061554
RefSeq Acc Id: XP_038358898   ⟸   XM_038502970
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038485985   ⟸   XM_038630057
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038485992   ⟸   XM_038630064
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485986   ⟸   XM_038630058
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485987   ⟸   XM_038630059
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485988   ⟸   XM_038630060
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485989   ⟸   XM_038630061
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485994   ⟸   XM_038630066
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485990   ⟸   XM_038630062
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485991   ⟸   XM_038630063
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485993   ⟸   XM_038630065
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485995   ⟸   XM_038630067
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038485996   ⟸   XM_038630068
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038283171   ⟸   XM_038427243
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SNA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310933   ⟸   XM_038455005
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310934   ⟸   XM_038455006
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310932   ⟸   XM_038455004
- Peptide Label: isoform X12
- UniProtKB: A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310935   ⟸   XM_038455007
- Peptide Label: isoform X13
- UniProtKB: A0A8P0N9A9 (UniProtKB/TrEMBL),   A0A8C0KE86 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310936   ⟸   XM_038455008
- Peptide Label: isoform X14
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421850   ⟸   XM_038565922
- Peptide Label: isoform X7
- UniProtKB: A0A8C0N575 (UniProtKB/TrEMBL),   A0A8C0SNA7 (UniProtKB/TrEMBL),   A0A8I3NE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421857   ⟸   XM_038565929
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421851   ⟸   XM_038565923
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421852   ⟸   XM_038565924
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421853   ⟸   XM_038565925
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421854   ⟸   XM_038565926
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421859   ⟸   XM_038565931
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421855   ⟸   XM_038565927
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421856   ⟸   XM_038565928
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421858   ⟸   XM_038565930
- Peptide Label: isoform X8
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8I3NK07 (UniProtKB/TrEMBL),   A0A8P0T309 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421860   ⟸   XM_038565932
- Peptide Label: isoform X9
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL),   A0A8P0N9A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421861   ⟸   XM_038565933
- Peptide Label: isoform X10
- UniProtKB: A0A8C0KE86 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845018773   ⟸   ENSCAFT00845023902
RefSeq Acc Id: ENSCAFP00845018746   ⟸   ENSCAFT00845023870
RefSeq Acc Id: ENSCAFP00845018756   ⟸   ENSCAFT00845023884
Protein Domains
LIM zinc-binding   PET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006804 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013332 UniProtKB/TrEMBL
  ENSCAFG00040015178 UniProtKB/TrEMBL
  ENSCAFG00845013396 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010961.6 UniProtKB/TrEMBL
  ENSCAFT00000061554.2 UniProtKB/TrEMBL
  ENSCAFT00000065051.2 UniProtKB/TrEMBL
  ENSCAFT00030024684.1 UniProtKB/TrEMBL
  ENSCAFT00040027943.1 UniProtKB/TrEMBL
  ENSCAFT00845023870.1 UniProtKB/TrEMBL
  ENSCAFT00845023884.1 UniProtKB/TrEMBL
  ENSCAFT00845023902.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro LIM1_prickle UniProtKB/TrEMBL
  LIM2_prickle UniProtKB/TrEMBL
  LIM3_prickle UniProtKB/TrEMBL
  PET_domain UniProtKB/TrEMBL
  PET_prickle UniProtKB/TrEMBL
  Pk/Esn/Tes UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report cfa:484699 UniProtKB/TrEMBL
NCBI Gene PRICKLE2 ENTREZGENE
PANTHER LIM DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PRICKLE-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
  PET UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PET UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A8C0KE86 ENTREZGENE
  A0A8C0N575 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SNA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NE98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NK07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N9A9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T309 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44966 ENTREZGENE