CCDC87 (coiled-coil domain containing 87) - Rat Genome Database

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Gene: CCDC87 (coiled-coil domain containing 87) Canis lupus familiaris
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Symbol: CCDC87
Name: coiled-coil domain containing 87
RGD ID: 12125021
Description: INVOLVED IN positive regulation of acrosome reaction (inferred); positive regulation of fertilization (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); intellectual disability (ortholog); Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 87
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,759,378 - 50,762,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,759,436 - 50,762,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,368,112 - 49,370,929 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,790,913 - 51,793,730 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,790,961 - 51,793,582 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,892,297 - 50,895,114 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,472,130 - 50,474,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,261,982 - 51,264,800 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
CCDC87
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,759,378 - 50,762,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,759,436 - 50,762,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,368,112 - 49,370,929 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,790,913 - 51,793,730 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,790,961 - 51,793,582 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,892,297 - 50,895,114 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,472,130 - 50,474,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,261,982 - 51,264,800 (+)NCBIUU_Cfam_GSD_1.0
CCDC87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,590,176 - 66,593,063 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,590,176 - 66,593,063 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,357,647 - 66,360,534 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,114,216 - 66,117,130 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map11q13.2NCBI
HuRef1162,685,282 - 62,688,197 (-)NCBIHuRef
CHM1_11166,241,371 - 66,244,285 (-)NCBICHM1_1
T2T-CHM13v2.01166,586,422 - 66,589,309 (-)NCBIT2T-CHM13v2.0
Ccdc87
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,889,394 - 4,892,556 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,889,394 - 4,892,556 (+)EnsemblGRCm39 Ensembl
GRCm38194,839,366 - 4,842,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,839,366 - 4,842,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,839,366 - 4,842,528 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,839,415 - 4,842,163 (+)NCBIMGSCv36mm8
Celera194,710,421 - 4,713,583 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.11NCBI
Ccdc87
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,564,419 - 211,567,115 (+)NCBIGRCr8
mRatBN7.21202,135,021 - 202,137,717 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,134,963 - 202,138,337 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,488,160 - 210,490,856 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,580,453 - 217,583,149 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,271,475 - 210,274,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,096,478 - 220,099,174 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,096,422 - 220,099,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,027,475 - 227,030,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,451,155 - 207,453,851 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1199,675,524 - 199,678,217 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ccdc87
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542218,772,869 - 18,775,548 (+)NCBIChiLan1.0ChiLan1.0
CCDC87
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,814,623 - 67,818,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,857,399 - 68,861,008 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,946,954 - 61,949,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,270,801 - 65,273,720 (-)NCBIpanpan1.1PanPan1.1panPan2
Ccdc87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,562,699 - 6,565,919 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365993,005,067 - 3,008,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC87
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,833,464 - 5,836,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,833,431 - 5,838,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,863,943 - 4,867,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC87
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,686,514 - 7,689,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,686,575 - 7,689,061 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,970,062 - 104,972,985 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc87
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,815,707 - 19,818,268 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,815,664 - 19,818,796 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC87
14 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
4 3 4 22 22 15 6 5 6 5 28 19 12 14 9

Sequence


Ensembl Acc Id: ENSCAFT00000019715   ⟹   ENSCAFP00000037913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1850,759,436 - 50,762,057 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845022492   ⟹   ENSCAFP00845017662
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1851,790,961 - 51,793,582 (+)Ensembl
RefSeq Acc Id: XM_038424875   ⟹   XP_038280803
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01851,790,913 - 51,793,730 (+)NCBI
RefSeq Acc Id: XM_038501116   ⟹   XP_038357044
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11850,892,297 - 50,895,114 (+)NCBI
RefSeq Acc Id: XM_038563815   ⟹   XP_038419743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,261,982 - 51,264,800 (+)NCBI
RefSeq Acc Id: XM_038627937   ⟹   XP_038483865
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01850,472,130 - 50,474,948 (+)NCBI
RefSeq Acc Id: XM_849617   ⟹   XP_854710
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11850,759,378 - 50,762,205 (+)NCBI
Dog10K_Boxer_Tasha1849,368,112 - 49,370,929 (+)NCBI
Sequence:
RefSeq Acc Id: XP_854710   ⟸   XM_849617
- UniProtKB: A0A8P0NPS3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000037913   ⟸   ENSCAFT00000019715
RefSeq Acc Id: XP_038357044   ⟸   XM_038501116
RefSeq Acc Id: XP_038483865   ⟸   XM_038627937
RefSeq Acc Id: XP_038280803   ⟸   XM_038424875
- UniProtKB: A0A8C0SL35 (UniProtKB/TrEMBL),   A0A8I3NLZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419743   ⟸   XM_038563815
Ensembl Acc Id: ENSCAFP00845017662   ⟸   ENSCAFT00845022492


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012426 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040013731 UniProtKB/TrEMBL
  ENSCAFG00845012639 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019715.5 UniProtKB/TrEMBL
  ENSCAFT00040025346.1 UniProtKB/TrEMBL
  ENSCAFT00845022492 ENTREZGENE
  ENSCAFT00845022492.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1520 UniProtKB/TrEMBL
InterPro CCDC87 UniProtKB/TrEMBL
KEGG Report cfa:611893 UniProtKB/TrEMBL
NCBI Gene CCDC87 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 87 UniProtKB/TrEMBL
  PTHR16078 UniProtKB/TrEMBL
Pfam MAP65_ASE1 UniProtKB/TrEMBL
UniProt A0A8C0SL35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NLZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NPS3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38866 ENTREZGENE