OR5G1B (olfactory receptor family 5 subfamily G member 1B) - Rat Genome Database

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Gene: OR5G1B (olfactory receptor family 5 subfamily G member 1B) Canis lupus familiaris
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Symbol: OR5G1B
Name: olfactory receptor family 5 subfamily G member 1B
RGD ID: 12124741
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR5G9; olfactory receptor; olfactory receptor 1009; OR04E05
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11839,181,765 - 39,182,709 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1839,181,765 - 39,182,709 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,728,332 - 38,729,276 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,864,797 - 39,865,741 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1839,864,797 - 39,865,741 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11839,460,140 - 39,461,084 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01839,033,706 - 39,034,650 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,651,013 - 39,651,957 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14659017   PMID:14962662   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in OR5G1B
11 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system
High
Medium
Low
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000012757   ⟹   ENSCAFP00000011813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1839,181,765 - 39,182,709 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845039582   ⟹   ENSCAFP00845031015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1839,864,797 - 39,865,741 (+)Ensembl
RefSeq Acc Id: NM_001388602   ⟹   NP_001375531
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1838,728,332 - 38,729,276 (+)NCBI
ROS_Cfam_1.01839,864,797 - 39,865,741 (+)NCBI
UMICH_Zoey_3.11839,460,140 - 39,461,084 (+)NCBI
UNSW_CanFamBas_1.01839,033,706 - 39,034,650 (+)NCBI
UU_Cfam_GSD_1.01839,651,013 - 39,651,957 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001375531 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD24133 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000011813.2
  ENSCAFP00030007579.1
  ENSCAFP00040024793.1
  ENSCAFP00845031015
  ENSCAFP00845031015.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000011813   ⟸   ENSCAFT00000012757
RefSeq Acc Id: NP_001375531   ⟸   NM_001388602
- UniProtKB: A0A8C0JG28 (UniProtKB/TrEMBL),   A0A8C0YZ57 (UniProtKB/TrEMBL),   A0A8I3PR76 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845031015   ⟸   ENSCAFT00845039582
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007993 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004699 UniProtKB/TrEMBL
  ENSCAFG00040015513 UniProtKB/TrEMBL
  ENSCAFG00845022431 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012757.3 UniProtKB/TrEMBL
  ENSCAFT00030008622.1 UniProtKB/TrEMBL
  ENSCAFT00040028541.1 UniProtKB/TrEMBL
  ENSCAFT00845039582 ENTREZGENE
  ENSCAFT00845039582.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene OR04E05 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0JG28 ENTREZGENE
  A0A8C0YZ57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PR76 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96868 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-04 OR5G1B  olfactory receptor family 5 subfamily G member 1B  OR04E05  olfactory receptor  Symbol and/or name change 5135510 APPROVED