PGR (progesterone receptor) - Rat Genome Database

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Gene: PGR (progesterone receptor) Canis lupus familiaris
Analyze
Symbol: PGR
Name: progesterone receptor
RGD ID: 12122857
Description: ENCODES a protein that exhibits ATPase binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to gonadotropin stimulus (ortholog); cellular response to luteinizing hormone stimulus (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); ataxia telangiectasia (ortholog); FOUND IN nucleus; axon (ortholog); axon terminus (ortholog); INTERACTS WITH progesterone
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: nuclear receptor subfamily 3 group C member 3; PR
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.121447,197 - 552,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl21447,319 - 552,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha21461,376 - 566,187 (+)NCBI
ROS_Cfam_1.021609,104 - 717,242 (+)NCBI
UMICH_Zoey_3.121392,996 - 497,928 (+)NCBI
UNSW_CanFamBas_1.021478,480 - 583,792 (+)NCBI
UU_Cfam_GSD_1.021532,736 - 637,643 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
progesterone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:11282275   PMID:16054892   PMID:19754547   PMID:19754577   PMID:20178635   PMID:25158022  


Genomics

Comparative Map Data
PGR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.121447,197 - 552,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl21447,319 - 552,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha21461,376 - 566,187 (+)NCBI
ROS_Cfam_1.021609,104 - 717,242 (+)NCBI
UMICH_Zoey_3.121392,996 - 497,928 (+)NCBI
UNSW_CanFamBas_1.021478,480 - 583,792 (+)NCBI
UU_Cfam_GSD_1.021532,736 - 637,643 (+)NCBI
PGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11101,029,624 - 101,129,813 (-)EnsemblGRCh38hg38GRCh38
GRCh3811101,029,624 - 101,130,681 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711100,900,355 - 101,000,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611100,414,313 - 100,506,465 (-)NCBINCBI36hg18NCBI36
Build 3411100,414,312 - 100,506,465NCBI
Celera1198,069,715 - 98,169,894 (-)NCBI
Cytogenetic Map11q22.1NCBI
HuRef1196,837,449 - 96,937,628 (-)NCBIHuRef
CHM1_111100,783,609 - 100,883,736 (-)NCBICHM1_1
Pgr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3998,890,017 - 8,968,612 (+)NCBIGRCm39mm39
GRCm39 Ensembl98,899,834 - 8,968,612 (+)Ensembl
GRCm3898,898,900 - 8,968,611 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl98,899,833 - 8,968,611 (+)EnsemblGRCm38mm10GRCm38
MGSCv3798,899,833 - 8,968,611 (+)NCBIGRCm37mm9NCBIm37
MGSCv3698,862,303 - 8,926,995 (+)NCBImm8
Celera96,279,529 - 6,348,253 (+)NCBICelera
Cytogenetic Map9A1NCBI
Pgr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.286,073,216 - 6,131,552 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl86,072,673 - 6,131,344 (+)Ensembl
Rnor_6.087,128,656 - 7,187,796 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl87,128,656 - 7,187,796 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.087,113,895 - 7,172,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.485,784,717 - 5,845,901 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.185,784,716 - 5,845,901 (+)NCBI
Celera87,609,728 - 7,668,047 (+)NCBICelera
Cytogenetic Map8q11NCBI
Pgr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554124,643,839 - 4,693,478 (-)NCBIChiLan1.0ChiLan1.0
PGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11199,508,571 - 99,598,020 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01195,997,677 - 96,098,866 (-)NCBIMhudiblu_PPA_v0panPan3
Pgr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494784,948,508 - 85,038,416 (-)NCBI
SpeTri2.0NW_0049365516,498,553 - 6,573,212 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl932,035,684 - 32,129,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1932,035,684 - 32,129,776 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2936,044,789 - 36,138,540 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9p13-p11NCBI
PGR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1192,420,970 - 92,519,128 (-)NCBI
ChlSab1.1 Ensembl192,430,453 - 92,517,296 (-)Ensembl
Vero_WHO_p1.0NW_02366604333,353,079 - 33,447,583 (+)NCBI
Pgr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248781,714,196 - 1,769,302 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 10 4 8 5
Below cutoff 5 4 12 6 5 6 6 2 8 5 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000006379   ⟹   ENSCAFP00000005906
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl21447,319 - 552,511 (+)Ensembl
RefSeq Acc Id: NM_001003074   ⟹   NP_001003074
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.121447,197 - 552,511 (+)NCBI
Dog10K_Boxer_Tasha21461,376 - 566,187 (+)NCBI
ROS_Cfam_1.021609,104 - 714,055 (+)NCBI
UMICH_Zoey_3.121392,996 - 497,928 (+)NCBI
UNSW_CanFamBas_1.021478,480 - 583,792 (+)NCBI
UU_Cfam_GSD_1.021532,736 - 637,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038429442   ⟹   XP_038285370
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.021609,739 - 717,242 (+)NCBI
RefSeq Acc Id: XM_038429443   ⟹   XP_038285371
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.021611,460 - 717,242 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001003074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038285370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038285371 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG09282 (Get FASTA)   NCBI Sequence Viewer  
  Q9GLW0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003074   ⟸   NM_001003074
- UniProtKB: Q9GLW0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSCAFP00000005906   ⟸   ENSCAFT00000006379
RefSeq Acc Id: XP_038285370   ⟸   XM_038429442
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038285371   ⟸   XM_038429443
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003978 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000005906 ENTREZGENE
Ensembl Transcript ENSCAFT00000006379 ENTREZGENE
NCBI Gene PGR ENTREZGENE
UniProt Q9GLW0 ENTREZGENE
VGNC ID VGNC:44469 ENTREZGENE