INAFM2 (InaF motif containing 2) - Rat Genome Database

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Gene: INAFM2 (InaF motif containing 2) Canis lupus familiaris
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Symbol: INAFM2
Name: InaF motif containing 2
RGD ID: 12120097
Description: FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative transmembrane protein INAFM2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,506,514 - 7,509,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,506,766 - 7,507,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,560,546 - 7,563,319 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,632,441 - 7,635,215 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1307,556,976 - 7,559,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,662,921 - 7,665,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,791,708 - 7,794,482 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
INAFM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,506,514 - 7,509,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,506,766 - 7,507,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,560,546 - 7,563,319 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,632,441 - 7,635,215 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1307,556,976 - 7,559,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,662,921 - 7,665,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,791,708 - 7,794,482 (+)NCBIUU_Cfam_GSD_1.0
INAFM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,323,692 - 40,326,715 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,323,692 - 40,326,715 (+)EnsemblGRCh38hg38GRCh38
GRCh371540,615,893 - 40,618,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1517,383,166 - 17,384,899 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,459,613 - 17,462,287 (+)NCBIHuRef
CHM1_11540,735,988 - 40,738,779 (+)NCBICHM1_1
T2T-CHM13v2.01538,130,541 - 38,133,587 (+)NCBIT2T-CHM13v2.0
Inafm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,576,239 - 118,579,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,576,239 - 118,579,291 (+)EnsemblGRCm39 Ensembl
GRCm382118,745,758 - 118,748,810 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,745,758 - 118,748,810 (+)EnsemblGRCm38mm10GRCm38
MGSCv372118,571,498 - 118,574,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,571,503 - 118,572,309 (+)NCBIMGSCv36mm8
Celera2119,900,645 - 119,903,695 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.45NCBI
Inafm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,182,124 - 126,185,194 (+)NCBIGRCr8
mRatBN7.23105,728,208 - 105,733,766 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.03110,540,349 - 110,545,882 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map3q35NCBI
Inafm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554167,251,468 - 7,253,776 (+)NCBIChiLan1.0ChiLan1.0
INAFM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,524,669 - 29,560,674 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,676,107 - 33,708,805 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,224,767 - 19,290,520 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,540,075 - 37,545,461 (+)NCBIpanpan1.1PanPan1.1panPan2
Inafm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,940,363 - 85,943,005 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364713,788,426 - 3,793,791 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INAFM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,991,894 - 130,992,355 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,989,737 - 130,992,592 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,124,949 - 146,127,759 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INAFM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,688,617 - 42,691,478 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604898,272,812 - 98,275,900 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Inafm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,626,021 - 7,626,494 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,625,874 - 7,628,673 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in INAFM2
11 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00000073653   ⟹   ENSCAFP00000054901
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl307,506,766 - 7,507,191 (+)Ensembl
RefSeq Acc Id: XM_014109662   ⟹   XP_013965137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1307,506,514 - 7,509,411 (+)NCBI
Dog10K_Boxer_Tasha307,560,546 - 7,563,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038441968   ⟹   XP_038297896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0307,632,441 - 7,635,215 (+)NCBI
RefSeq Acc Id: XM_038516459   ⟹   XP_038372387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1307,556,976 - 7,559,750 (+)NCBI
RefSeq Acc Id: XM_038580050   ⟹   XP_038435978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0307,791,708 - 7,794,482 (+)NCBI
RefSeq Acc Id: XM_038644325   ⟹   XP_038500253
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0307,662,921 - 7,665,701 (+)NCBI
RefSeq Acc Id: XP_013965137   ⟸   XM_014109662
- UniProtKB: A0A8C0JXZ9 (UniProtKB/TrEMBL),   A0A8C0RSG3 (UniProtKB/TrEMBL),   A0A8P0P4B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000054901   ⟸   ENSCAFT00000073653
RefSeq Acc Id: XP_038372387   ⟸   XM_038516459
RefSeq Acc Id: XP_038500253   ⟸   XM_038644325
RefSeq Acc Id: XP_038297896   ⟸   XM_038441968
- UniProtKB: A0A8C0JXZ9 (UniProtKB/TrEMBL),   A0A8C0RSG3 (UniProtKB/TrEMBL),   A0A8P0P4B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038435978   ⟸   XM_038580050
- UniProtKB: A0A8C0JXZ9 (UniProtKB/TrEMBL),   A0A8C0RSG3 (UniProtKB/TrEMBL),   A0A8P0P4B1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000045582 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030024230 UniProtKB/TrEMBL
  ENSCAFG00040025558 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000073653.2 UniProtKB/TrEMBL
  ENSCAFT00030044573.1 UniProtKB/TrEMBL
  ENSCAFT00040047704.1 UniProtKB/TrEMBL
InterPro InaF-motif UniProtKB/TrEMBL
NCBI Gene INAFM2 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN INAFM2-RELATED UniProtKB/TrEMBL
  ZGC:153157 UniProtKB/TrEMBL
Pfam InaF-motif UniProtKB/TrEMBL
UniProt A0A8C0JXZ9 ENTREZGENE
  A0A8C0RSG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P4B1 ENTREZGENE
UniProt Secondary A0A8P0P4B1 UniProtKB/TrEMBL