OR5AS1 (olfactory receptor family 5 subfamily AS member 1) - Rat Genome Database

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Gene: OR5AS1 (olfactory receptor family 5 subfamily AS member 1) Canis lupus familiaris
Analyze
Symbol: OR5AS1
Name: olfactory receptor family 5 subfamily AS member 1
RGD ID: 12119136
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: MODEL
Previously known as: olfactory receptor 5AS1; olfactory receptor, family 5, subfamily AS, member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11839,827,651 - 39,828,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1839,827,651 - 39,828,589 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1839,352,559 - 39,353,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01840,517,203 - 40,518,141 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1840,517,203 - 40,518,141 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11840,127,671 - 40,128,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01839,688,721 - 39,689,659 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01840,276,050 - 40,276,988 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OR5AS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11839,827,651 - 39,828,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1839,827,651 - 39,828,589 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1839,352,559 - 39,353,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01840,517,203 - 40,518,141 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1840,517,203 - 40,518,141 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11840,127,671 - 40,128,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01839,688,721 - 39,689,659 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01840,276,050 - 40,276,988 (-)NCBIUU_Cfam_GSD_1.0
OR5AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,027,654 - 56,038,191 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,027,654 - 56,038,191 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,795,130 - 55,805,667 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,554,471 - 55,555,445 (+)NCBINCBI36Build 36hg18NCBI36
Build 341155,554,470 - 55,555,445NCBI
Celera1153,138,060 - 53,139,034 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1152,126,884 - 52,127,858 (+)NCBIHuRef
CHM1_11155,663,434 - 55,664,408 (+)NCBICHM1_1
T2T-CHM13v2.01155,965,991 - 55,976,529 (+)NCBIT2T-CHM13v2.0
Or5as1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39286,980,064 - 86,981,003 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl286,979,525 - 86,982,968 (-)EnsemblGRCm39 Ensembl
GRCm38287,149,720 - 87,150,659 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl287,149,181 - 87,152,624 (-)EnsemblGRCm38mm10GRCm38
MGSCv37286,989,877 - 86,990,816 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36286,950,560 - 86,951,498 (-)NCBIMGSCv36mm8
Celera288,739,235 - 88,740,174 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.86NCBI
Or5as1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8392,780,992 - 92,781,930 (-)NCBIGRCr8
mRatBN7.2372,324,043 - 72,324,981 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl372,323,706 - 72,326,585 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx375,786,160 - 75,787,098 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0384,384,701 - 84,385,639 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0382,142,683 - 82,143,621 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0374,867,637 - 74,868,575 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl374,867,637 - 74,868,575 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0381,518,429 - 81,519,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4370,609,517 - 70,610,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1370,505,888 - 70,506,827 (-)NCBI
Celera371,637,149 - 71,638,087 (-)NCBICelera
Cytogenetic Map3q24NCBI
LOC100973137
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2957,181,936 - 57,192,456 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,197,620 - 58,208,143 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01151,268,032 - 51,268,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC100511340
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1951,413,280 - 51,414,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2956,071,316 - 56,072,245 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103235728
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,701,710 - 16,703,494 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038114,021,033 - 114,022,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR5AS1
11 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000012891   ⟹   ENSCAFP00000011932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1839,827,651 - 39,828,589 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011779   ⟹   ENSCAFP00845009194
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1840,517,203 - 40,518,141 (-)Ensembl
RefSeq Acc Id: XM_003432381   ⟹   XP_003432429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11839,827,651 - 39,828,589 (-)NCBI
Dog10K_Boxer_Tasha1839,352,559 - 39,353,497 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038425519   ⟹   XP_038281447
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01840,517,203 - 40,518,141 (-)NCBI
RefSeq Acc Id: XM_038501840   ⟹   XP_038357768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11840,127,671 - 40,128,608 (-)NCBI
RefSeq Acc Id: XM_038564479   ⟹   XP_038420407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01840,276,050 - 40,276,988 (-)NCBI
RefSeq Acc Id: XM_038628597   ⟹   XP_038484525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01839,688,721 - 39,689,659 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003432429   ⟸   XM_003432381
- UniProtKB: A0A8C0LPV4 (UniProtKB/TrEMBL),   A0A8C0RC98 (UniProtKB/TrEMBL),   A0A8I3MZI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000011932   ⟸   ENSCAFT00000012891
RefSeq Acc Id: XP_038357768   ⟸   XM_038501840
RefSeq Acc Id: XP_038484525   ⟸   XM_038628597
RefSeq Acc Id: XP_038281447   ⟸   XM_038425519
- UniProtKB: A0A8C0LPV4 (UniProtKB/TrEMBL),   A0A8C0RC98 (UniProtKB/TrEMBL),   A0A8I3MZI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420407   ⟸   XM_038564479
- UniProtKB: A0A8C0LPV4 (UniProtKB/TrEMBL),   A0A8C0RC98 (UniProtKB/TrEMBL),   A0A8I3MZI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845009194   ⟸   ENSCAFT00845011779
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008097 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004085 UniProtKB/TrEMBL
  ENSCAFG00845006642 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012891.4 UniProtKB/TrEMBL
  ENSCAFT00030007524.1 UniProtKB/TrEMBL
  ENSCAFT00845011779 ENTREZGENE
  ENSCAFT00845011779.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report cfa:100685814 UniProtKB/TrEMBL
NCBI Gene OR5AS1 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0LPV4 ENTREZGENE
  A0A8C0RC98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MZI7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96838 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-04 OR5AS1  olfactory receptor family 5 subfamily AS member 1  OR5AS1  olfactory receptor, family 5, subfamily AS, member 1  Symbol and/or name change 5135510 APPROVED