GLOD4 (glyoxalase domain containing 4) - Rat Genome Database

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Gene: GLOD4 (glyoxalase domain containing 4) Canis lupus familiaris
Analyze
Symbol: GLOD4
Name: glyoxalase domain containing 4
RGD ID: 12118766
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glyoxalase domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,011,836 - 45,032,990 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,011,868 - 45,032,825 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha944,162,356 - 44,183,516 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0945,829,933 - 45,851,541 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl945,829,998 - 45,853,781 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1944,608,654 - 44,629,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0944,902,482 - 44,923,655 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0944,981,014 - 45,002,178 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
GLOD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,011,836 - 45,032,990 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,011,868 - 45,032,825 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha944,162,356 - 44,183,516 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0945,829,933 - 45,851,541 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl945,829,998 - 45,853,781 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1944,608,654 - 44,629,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0944,902,482 - 44,923,655 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0944,981,014 - 45,002,178 (+)NCBIUU_Cfam_GSD_1.0
GLOD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817759,330 - 785,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl17757,097 - 782,294 (-)EnsemblGRCh38hg38GRCh38
GRCh3717662,570 - 685,520 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3617609,320 - 632,297 (-)NCBINCBI36Build 36hg18NCBI36
Build 3417609,321 - 632,297NCBI
Celera17674,641 - 697,712 (-)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef17573,428 - 596,166 (-)NCBIHuRef
CHM1_117671,346 - 694,381 (-)NCBICHM1_1
T2T-CHM13v2.017644,616 - 672,323 (-)NCBIT2T-CHM13v2.0
Glod4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,111,221 - 76,134,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,011,813 - 76,134,551 (-)EnsemblGRCm39 Ensembl
GRCm381176,220,395 - 76,243,699 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,120,987 - 76,243,725 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,033,897 - 76,057,201 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361176,037,705 - 76,059,851 (-)NCBIMGSCv36mm8
Celera1183,733,081 - 83,756,527 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.92NCBI
Glod4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81061,575,770 - 61,594,111 (-)NCBIGRCr8
mRatBN7.21061,077,535 - 61,095,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1061,066,421 - 61,095,898 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1065,719,947 - 65,738,423 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01065,225,395 - 65,243,871 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01060,695,868 - 60,714,218 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,379,922 - 64,398,263 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,379,921 - 64,398,294 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01063,616,109 - 63,633,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,575,440 - 63,600,076 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,589,063 - 63,613,699 (-)NCBI
Celera1060,092,924 - 60,111,269 (-)NCBICelera
Cytogenetic Map10q24NCBI
Glod4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554812,317,869 - 2,324,352 (-)NCBIChiLan1.0ChiLan1.0
GLOD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,309,958 - 8,332,621 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11710,280,376 - 10,302,051 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v017729,589 - 750,582 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.117651,510 - 673,201 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl17651,974 - 673,885 (-)NCBIpanpan1.1panPan2
Glod4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560244,126,184 - 44,149,261 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365387,004,175 - 7,043,459 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365387,004,149 - 7,026,729 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLOD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11247,087,431 - 47,103,801 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,251,699 - 49,268,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLOD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116508,459 - 527,068 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605921,557,844 - 21,576,241 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glod4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247863,532,273 - 3,564,750 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247863,532,332 - 3,548,760 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLOD4
238 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 5 6 6 6 12 10 6
Low 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022423437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000030372   ⟹   ENSCAFP00000028219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl945,011,868 - 45,032,825 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845024323   ⟹   ENSCAFP00845019109
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl945,829,998 - 45,853,781 (+)Ensembl
RefSeq Acc Id: XM_038486578   ⟹   XP_038342506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1944,608,654 - 44,629,949 (+)NCBI
RefSeq Acc Id: XM_038486579   ⟹   XP_038342507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1944,611,426 - 44,629,949 (+)NCBI
RefSeq Acc Id: XM_038548435   ⟹   XP_038404363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0944,981,014 - 45,002,178 (+)NCBI
RefSeq Acc Id: XM_038548436   ⟹   XP_038404364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0944,983,784 - 45,002,178 (+)NCBI
RefSeq Acc Id: XM_038612345   ⟹   XP_038468273
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha944,165,124 - 44,183,516 (+)NCBI
RefSeq Acc Id: XM_038612373   ⟹   XP_038468301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0944,902,482 - 44,923,655 (+)NCBI
RefSeq Acc Id: XM_038612374   ⟹   XP_038468302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0944,905,251 - 44,923,655 (+)NCBI
RefSeq Acc Id: XM_038677649   ⟹   XP_038533577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0945,829,933 - 45,851,541 (+)NCBI
RefSeq Acc Id: XM_038677650   ⟹   XP_038533578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0945,832,712 - 45,851,541 (+)NCBI
RefSeq Acc Id: XM_537759   ⟹   XP_537759
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1945,011,836 - 45,032,990 (+)NCBI
Dog10K_Boxer_Tasha944,162,356 - 44,183,516 (+)NCBI
Sequence:
RefSeq Acc Id: XP_537759   ⟸   XM_537759
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QYU4 (UniProtKB/TrEMBL),   A0A8C0RVV2 (UniProtKB/TrEMBL),   A0A8I3NSX2 (UniProtKB/TrEMBL),   A0A8C0NH31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028219   ⟸   ENSCAFT00000030372
RefSeq Acc Id: XP_038342506   ⟸   XM_038486578
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038342507   ⟸   XM_038486579
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038468301   ⟸   XM_038612373
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038468302   ⟸   XM_038612374
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038533577   ⟸   XM_038677649
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QYU4 (UniProtKB/TrEMBL),   A0A8C0RVV2 (UniProtKB/TrEMBL),   A0A8I3NSX2 (UniProtKB/TrEMBL),   A0A8C0NH31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533578   ⟸   XM_038677650
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038468273   ⟸   XM_038612345
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038404363   ⟸   XM_038548435
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NH31 (UniProtKB/TrEMBL),   A0A8C0QYU4 (UniProtKB/TrEMBL),   A0A8C0RVV2 (UniProtKB/TrEMBL),   A0A8I3NSX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038404364   ⟸   XM_038548436
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845019109   ⟸   ENSCAFT00845024323
Protein Domains
VOC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019124 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016451 UniProtKB/TrEMBL
  ENSCAFG00040002145 UniProtKB/TrEMBL
  ENSCAFG00845013647 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030372.5 UniProtKB/TrEMBL
  ENSCAFT00030030322.1 UniProtKB/TrEMBL
  ENSCAFT00040004076.1 UniProtKB/TrEMBL
  ENSCAFT00845024323 ENTREZGENE
  ENSCAFT00845024323.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.180.10 UniProtKB/TrEMBL
InterPro GLOD4 UniProtKB/TrEMBL
  GLOD4_C UniProtKB/TrEMBL
  Glyas_Bleomycin-R_OHBP_Dase UniProtKB/TrEMBL
  VOC UniProtKB/TrEMBL
NCBI Gene GLOD4 ENTREZGENE
PANTHER GLYOXALASE DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  PTHR46466 UniProtKB/TrEMBL
Pfam GLOD4_C UniProtKB/TrEMBL
  GLOD4_N UniProtKB/TrEMBL
PROSITE VOC UniProtKB/TrEMBL
Superfamily-SCOP SSF54593 UniProtKB/TrEMBL
UniProt A0A8C0NH31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QYU4 ENTREZGENE
  A0A8C0RVV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NSX2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:55570 ENTREZGENE