Gene: GLOD4 (glyoxalase domain containing 4) Canis lupus familiaris |
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Analyze |
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Symbol: |
GLOD4 |
Name: |
glyoxalase domain containing 4 |
RGD ID: |
12118766 |
Description: |
ASSOCIATED WITH genetic disease (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
glyoxalase domain-containing protein 4 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
CanFam3.1 - Dog CanFam3.1 Assembly |
Position: |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 45,011,836 - 45,032,990 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 45,011,868 - 45,032,825 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 44,162,356 - 44,183,516 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 45,829,933 - 45,851,541 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 45,829,998 - 45,853,781 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 44,608,654 - 44,629,949 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 44,902,482 - 44,923,655 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 44,981,014 - 45,002,178 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
GLOD4 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 45,011,836 - 45,032,990 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 45,011,868 - 45,032,825 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 44,162,356 - 44,183,516 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 45,829,933 - 45,851,541 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 45,829,998 - 45,853,781 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 44,608,654 - 44,629,949 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 44,902,482 - 44,923,655 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 44,981,014 - 45,002,178 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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GLOD4 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 759,330 - 785,895 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 757,097 - 782,294 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 662,570 - 685,520 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 609,320 - 632,297 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 17 | 609,321 - 632,297 | NCBI | | | | | Celera | 17 | 674,641 - 697,712 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | p13.3 | NCBI | | | | | HuRef | 17 | 573,428 - 596,166 (-) | NCBI | | HuRef | | | CHM1_1 | 17 | 671,346 - 694,381 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 644,616 - 672,323 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Glod4 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 76,111,221 - 76,134,525 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 76,011,813 - 76,134,551 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 76,220,395 - 76,243,699 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 76,120,987 - 76,243,725 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 76,033,897 - 76,057,201 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 76,037,705 - 76,059,851 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 83,733,081 - 83,756,527 (-) | NCBI | | Celera | | | Cytogenetic Map | 11 | B5 | NCBI | | | | | cM Map | 11 | 45.92 | NCBI | | | | |
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Glod4 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 61,575,770 - 61,594,111 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 61,077,535 - 61,095,876 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 61,066,421 - 61,095,898 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 65,719,947 - 65,738,423 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 65,225,395 - 65,243,871 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 60,695,868 - 60,714,218 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 64,379,922 - 64,398,263 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 64,379,921 - 64,398,294 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 63,616,109 - 63,633,602 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 63,575,440 - 63,600,076 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 63,589,063 - 63,613,699 (-) | NCBI | | | | | Celera | 10 | 60,092,924 - 60,111,269 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q24 | NCBI | | | | |
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Glod4 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955481 | 2,317,869 - 2,324,352 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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GLOD4 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 8,309,958 - 8,332,621 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 10,280,376 - 10,302,051 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 729,589 - 750,582 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 651,510 - 673,201 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 651,974 - 673,885 (-) | NCBI | panpan1.1 | | panPan2 | |
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Glod4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 44,126,184 - 44,149,261 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936538 | 7,004,175 - 7,043,459 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936538 | 7,004,149 - 7,026,729 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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GLOD4 (Sus scrofa - pig) |
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GLOD4 (Chlorocebus sabaeus - green monkey) |
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Glod4 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
reproductive system |
respiratory system |
adipose tissue |
High |
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Medium |
5
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5
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22
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6
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5
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6
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6
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6
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12
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10
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6
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Low |
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1
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8
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Below cutoff |
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Sequence
RefSeq Acc Id: |
ENSCAFT00000030372 ⟹ ENSCAFP00000028219 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 9 | 45,011,868 - 45,032,825 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00845024323 ⟹ ENSCAFP00845019109 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 Ensembl | 9 | 45,829,998 - 45,853,781 (+) | Ensembl |
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RefSeq Acc Id: |
XM_038486578 ⟹ XP_038342506 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 9 | 44,608,654 - 44,629,949 (+) | NCBI |
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RefSeq Acc Id: |
XM_038486579 ⟹ XP_038342507 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 9 | 44,611,426 - 44,629,949 (+) | NCBI |
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RefSeq Acc Id: |
XM_038548435 ⟹ XP_038404363 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 9 | 44,981,014 - 45,002,178 (+) | NCBI |
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RefSeq Acc Id: |
XM_038548436 ⟹ XP_038404364 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 9 | 44,983,784 - 45,002,178 (+) | NCBI |
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RefSeq Acc Id: |
XM_038612345 ⟹ XP_038468273 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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Dog10K_Boxer_Tasha | 9 | 44,165,124 - 44,183,516 (+) | NCBI |
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RefSeq Acc Id: |
XM_038612373 ⟹ XP_038468301 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 9 | 44,902,482 - 44,923,655 (+) | NCBI |
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RefSeq Acc Id: |
XM_038612374 ⟹ XP_038468302 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 9 | 44,905,251 - 44,923,655 (+) | NCBI |
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RefSeq Acc Id: |
XM_038677649 ⟹ XP_038533577 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 9 | 45,829,933 - 45,851,541 (+) | NCBI |
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RefSeq Acc Id: |
XM_038677650 ⟹ XP_038533578 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 9 | 45,832,712 - 45,851,541 (+) | NCBI |
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RefSeq Acc Id: |
XM_537759 ⟹ XP_537759 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 | 9 | 45,011,836 - 45,032,990 (+) | NCBI | Dog10K_Boxer_Tasha | 9 | 44,162,356 - 44,183,516 (+) | NCBI |
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Sequence: |
GCCGGCGGGGACCAGTGACGTCACGACCGGCCCGCGCAGCCTCCTGACGGTGTGTTTCGCTAAT AGCTATGGCTACTCGTCGAGCTTTGCACTTCGTGTTCAAAGTGGGAAACCGCTTCCAGACCGCG CGTTTCTTTCGCGATGTCCTGGGGATGAAGATTCTGCGGCATGAGGAATTTGAAGAAGGCTGCA AAGCTGCCTGTAATGGGCCTTATGATGGGAAATGGAGTAAAACAATGGTGGGATTTGGACCTGA AGATGATCATTTTGTTGCAGAATTGACTTATAATTATGGCATCGGACACTACAAGCTTGGCAAT GACTTCATGGGTATCACACTCGTTTCCAGCCAAGCTGTCTGCAATGCCAGGAAGCTGGAGTGGC CTCTCAGTGAAGTTACAGAAGGTATTTTTGAAACCGAGGCCCCAGGAGGATATAAGTTCTATTT GCAGGATCACAGTCCACCTGAGTCAGATCCTGTATTAAAAGTAACTCTAGCAGTGTCTGATCTT CAGAAGTCCTTGAACTACTGGTCTAATCTACTGGGAATGAAAATATATGAAAAAGATGAAGAGA AGCAAAGGGTTTTGCTGGGCTATGCTGATAACCAATGTAAGCTGGAGCTACAGGGTATTAAGGG TACAATTGATCATGCAGCAGCTTTTGGAAGAATTGCCTTTTCTTGCCCCCAAAAAGAGTTACCA GACTTAGAAGACTTGATGAAAAGGGAAAACCAGAAGATTCTGACTCCCCTGGTGAGTCTGGATA CCCCAGGGAAAGCAACAGTACAAGTGATCATTCTGGCTGACCCTGATGGACATGAAATTTGCTT TGTAGGGGATGAAGCATTTCGAGAACTTTCTAAGATGGATCCAGAGGGAAGCAGATTGTTGGAT GATGCAATGGCGGCAGATAAAAGTGACGAATGGTTCACTAAACAAAATAAATCCAAGGCTTCGG GATAACAGAAGACATGATGTGGAACAGCATTTGTGATTCCTGTGTAGCACCTGCAAGCCCTGAT GTGTCTGTGCATGATAAATGTTCTCACAACTTGGTTGTTTCCTGTATAGGCAAGGGGGGTGTGG TGGTAAAGATCTGTGTGTTATACTCTTTGAAAGCTCTAAGATAAATTTTAGAAATAAAATCCTA TTATTATCAGTCCA
hide sequence
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RefSeq Acc Id: |
XP_537759 ⟸ XM_537759 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8C0QYU4 (UniProtKB/TrEMBL), A0A8C0RVV2 (UniProtKB/TrEMBL), A0A8I3NSX2 (UniProtKB/TrEMBL), A0A8C0NH31 (UniProtKB/TrEMBL) |
- Sequence: |
MATRRALHFVFKVGNRFQTARFFRDVLGMKILRHEEFEEGCKAACNGPYDGKWSKTMVGFGPED DHFVAELTYNYGIGHYKLGNDFMGITLVSSQAVCNARKLEWPLSEVTEGIFETEAPGGYKFYLQ DHSPPESDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEEKQRVLLGYADNQCKLELQGIKGT IDHAAAFGRIAFSCPQKELPDLEDLMKRENQKILTPLVSLDTPGKATVQVIILADPDGHEICFV GDEAFRELSKMDPEGSRLLDDAMAADKSDEWFTKQNKSKASG
hide sequence
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RefSeq Acc Id: |
ENSCAFP00000028219 ⟸ ENSCAFT00000030372 |
RefSeq Acc Id: |
XP_038342506 ⟸ XM_038486578 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038342507 ⟸ XM_038486579 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038468301 ⟸ XM_038612373 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_038468302 ⟸ XM_038612374 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038533577 ⟸ XM_038677649 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8C0QYU4 (UniProtKB/TrEMBL), A0A8C0RVV2 (UniProtKB/TrEMBL), A0A8I3NSX2 (UniProtKB/TrEMBL), A0A8C0NH31 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038533578 ⟸ XM_038677650 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038468273 ⟸ XM_038612345 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
XP_038404363 ⟸ XM_038548435 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A8C0NH31 (UniProtKB/TrEMBL), A0A8C0QYU4 (UniProtKB/TrEMBL), A0A8C0RVV2 (UniProtKB/TrEMBL), A0A8I3NSX2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038404364 ⟸ XM_038548436 |
- Peptide Label: |
isoform X2 |
RefSeq Acc Id: |
ENSCAFP00845019109 ⟸ ENSCAFT00845024323 |
Additional Information
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