ABCA1 (ATP binding cassette subfamily A member 1) - Rat Genome Database

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Gene: ABCA1 (ATP binding cassette subfamily A member 1) Canis lupus familiaris
Analyze
Symbol: ABCA1
Name: ATP binding cassette subfamily A member 1
RGD ID: 12116164
Description: ENCODES a protein that exhibits ATPase-coupled transmembrane transporter activity (ortholog); high-density lipoprotein particle binding (ortholog); INVOLVED IN cellular response to cholesterol (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to high density lipoprotein particle stimulus (ortholog); PARTICIPATES IN altered reverse cholesterol transport pathway; retinol metabolic pathway; reverse cholesterol transport pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Alzheimer's disease (ortholog); aortic atherosclerosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family A member 1; phospholipid-transporting ATPase ABCA1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11160,761,669 - 60,869,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1160,761,655 - 60,890,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1159,222,894 - 59,351,153 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01161,895,159 - 62,023,474 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1161,896,168 - 62,023,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11160,416,579 - 60,544,839 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01160,430,633 - 60,559,576 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01161,125,735 - 61,254,053 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adenylate cyclase-activating G protein-coupled receptor signaling pathway  (IEA)
apolipoprotein A-I-mediated signaling pathway  (IEA)
cellular response to cholesterol  (ISO)
cellular response to cytokine stimulus  (ISO)
cellular response to high density lipoprotein particle stimulus  (ISO)
cellular response to lipopolysaccharide  (IEA)
cellular response to retinoic acid  (IEA)
cellular response to xenobiotic stimulus  (ISO)
cholesterol efflux  (IEA,ISO)
cholesterol homeostasis  (IEA)
cholesterol metabolic process  (IEA,ISO)
cholesterol transport  (ISO)
endosomal transport  (IEA)
establishment of localization in cell  (IEA,ISO)
export across plasma membrane  (IEA)
G protein-coupled receptor signaling pathway  (IEA)
high-density lipoprotein particle assembly  (IEA)
intracellular cholesterol transport  (IEA)
lipoprotein biosynthetic process  (IEA,ISO)
lipoprotein metabolic process  (IEA,ISO)
lysosome organization  (IEA)
peptide secretion  (IEA,ISO)
phagocytosis, engulfment  (IEA,ISO)
phospholipid efflux  (IEA,ISO)
phospholipid homeostasis  (IEA)
phospholipid translocation  (IEA,ISO)
phospholipid transport  (ISO)
platelet dense granule organization  (IEA)
positive regulation of cholesterol efflux  (IEA)
positive regulation of high-density lipoprotein particle assembly  (IEA)
protein lipidation  (ISO)
protein secretion  (IEA)
protein transmembrane transport  (IEA)
regulation of Cdc42 protein signal transduction  (IEA)
response to laminar fluid shear stress  (IEA)
response to nutrient  (ISO)
response to nutrient levels  (ISO)
response to vitamin B3  (ISO)
response to xenobiotic stimulus  (ISO)
reverse cholesterol transport  (IEA)
signal release  (IEA)
sphingolipid translocation  (IEA)
transmembrane transport  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:19225884   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11160,761,669 - 60,869,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1160,761,655 - 60,890,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1159,222,894 - 59,351,153 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01161,895,159 - 62,023,474 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1161,896,168 - 62,023,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11160,416,579 - 60,544,839 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01160,430,633 - 60,559,576 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01161,125,735 - 61,254,053 (-)NCBIUU_Cfam_GSD_1.0
ABCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389104,781,006 - 104,928,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9104,781,006 - 104,928,155 (-)EnsemblGRCh38hg38GRCh38
GRCh379107,543,287 - 107,690,436 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369106,583,104 - 106,730,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 349104,622,837 - 104,769,991NCBI
Celera978,048,593 - 78,195,737 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef977,145,450 - 77,292,489 (-)NCBIHuRef
CHM1_19107,690,161 - 107,837,338 (-)NCBICHM1_1
T2T-CHM13v2.09116,955,789 - 117,102,979 (-)NCBIT2T-CHM13v2.0
Abca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,030,789 - 53,159,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl453,030,787 - 53,159,895 (-)EnsemblGRCm39 Ensembl
GRCm38453,030,789 - 53,159,988 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,030,787 - 53,159,895 (-)EnsemblGRCm38mm10GRCm38
MGSCv37453,043,661 - 53,172,767 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36453,051,888 - 53,180,992 (-)NCBIMGSCv36mm8
Celera453,009,587 - 53,133,003 (-)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.57NCBI
Abca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8572,473,676 - 72,596,563 (-)NCBIGRCr8
mRatBN7.2567,678,267 - 67,801,162 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl567,681,297 - 67,801,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx569,563,415 - 69,686,148 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0571,378,268 - 71,502,004 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0571,352,251 - 71,474,997 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0569,857,717 - 69,983,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl569,857,771 - 69,983,015 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0574,023,652 - 74,112,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4570,493,357 - 70,583,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1570,498,469 - 70,588,842 (-)NCBI
Celera566,575,764 - 66,665,022 (-)NCBICelera
Cytogenetic Map5q23-q24NCBI
Abca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541921,553,835 - 21,681,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541921,553,863 - 21,681,626 (+)NCBIChiLan1.0ChiLan1.0
ABCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,463,364 - 34,610,716 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1934,465,794 - 34,613,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0975,948,831 - 76,096,136 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19104,076,516 - 104,224,188 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,076,516 - 104,224,188 (-)Ensemblpanpan1.1panPan2
Abca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947175,953,909 - 176,088,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365597,177,904 - 7,312,741 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365597,177,887 - 7,312,660 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,144,277 - 246,278,492 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,144,277 - 246,278,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21275,475,434 - 275,507,918 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11234,587,123 - 34,734,936 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1234,587,118 - 34,731,642 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660357,887,897 - 8,035,290 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abca1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247586,449,629 - 6,588,664 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247586,449,583 - 6,590,244 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCA1
1589 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014117893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022425668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022425669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022425670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038490880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038552999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000004346   ⟹   ENSCAFP00000004019
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1160,763,986 - 60,890,496 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000078811   ⟹   ENSCAFP00000048700
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1160,761,655 - 60,890,496 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000081784   ⟹   ENSCAFP00000065906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1160,763,986 - 60,890,496 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000093903   ⟹   ENSCAFP00000052429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1160,761,655 - 60,890,496 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018307   ⟹   ENSCAFP00845014286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1161,896,168 - 62,023,462 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018528   ⟹   ENSCAFP00845014454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1161,896,168 - 62,023,443 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018778   ⟹   ENSCAFP00845014662
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1161,896,168 - 62,023,443 (-)Ensembl
RefSeq Acc Id: XM_014117893   ⟹   XP_013973368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11160,761,669 - 60,869,753 (-)NCBI
Dog10K_Boxer_Tasha1159,222,894 - 59,351,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014117894   ⟹   XP_013973369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11160,761,669 - 60,869,753 (-)NCBI
Dog10K_Boxer_Tasha1159,222,894 - 59,351,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022425668   ⟹   XP_022281376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11160,761,669 - 60,869,753 (-)NCBI
Dog10K_Boxer_Tasha1159,222,894 - 59,351,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022425669   ⟹   XP_022281377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11160,761,669 - 60,869,753 (-)NCBI
Dog10K_Boxer_Tasha1159,222,894 - 59,351,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022425670   ⟹   XP_022281378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11160,765,807 - 60,869,753 (-)NCBI
Dog10K_Boxer_Tasha1159,227,047 - 59,351,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038490876   ⟹   XP_038346804
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11160,416,579 - 60,544,839 (-)NCBI
RefSeq Acc Id: XM_038490877   ⟹   XP_038346805
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11160,416,579 - 60,544,839 (-)NCBI
RefSeq Acc Id: XM_038490878   ⟹   XP_038346806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11160,416,579 - 60,544,839 (-)NCBI
RefSeq Acc Id: XM_038490879   ⟹   XP_038346807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11160,416,579 - 60,544,839 (-)NCBI
RefSeq Acc Id: XM_038490880   ⟹   XP_038346808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11160,420,732 - 60,544,839 (-)NCBI
RefSeq Acc Id: XM_038552999   ⟹   XP_038408927
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01161,125,735 - 61,254,053 (-)NCBI
RefSeq Acc Id: XM_038553000   ⟹   XP_038408928
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01161,125,735 - 61,254,053 (-)NCBI
RefSeq Acc Id: XM_038553001   ⟹   XP_038408929
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01161,125,735 - 61,254,053 (-)NCBI
RefSeq Acc Id: XM_038553002   ⟹   XP_038408930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01161,125,735 - 61,254,053 (-)NCBI
RefSeq Acc Id: XM_038553003   ⟹   XP_038408931
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01161,129,890 - 61,254,053 (-)NCBI
RefSeq Acc Id: XM_038616881   ⟹   XP_038472809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01160,430,633 - 60,559,576 (-)NCBI
RefSeq Acc Id: XM_038616882   ⟹   XP_038472810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01160,430,633 - 60,559,576 (-)NCBI
RefSeq Acc Id: XM_038616883   ⟹   XP_038472811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01160,430,633 - 60,559,576 (-)NCBI
RefSeq Acc Id: XM_038616884   ⟹   XP_038472812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01160,430,633 - 60,559,576 (-)NCBI
RefSeq Acc Id: XM_038616885   ⟹   XP_038472813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01160,434,788 - 60,559,576 (-)NCBI
RefSeq Acc Id: XM_038682333   ⟹   XP_038538261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01161,895,159 - 62,023,474 (-)NCBI
RefSeq Acc Id: XM_038682334   ⟹   XP_038538262
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01161,895,159 - 62,023,474 (-)NCBI
RefSeq Acc Id: XM_038682335   ⟹   XP_038538263
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01161,895,159 - 62,023,474 (-)NCBI
RefSeq Acc Id: XM_038682336   ⟹   XP_038538264
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01161,895,159 - 62,023,474 (-)NCBI
RefSeq Acc Id: XM_038682337   ⟹   XP_038538265
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01161,899,314 - 62,023,474 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013973368 (Get FASTA)   NCBI Sequence Viewer  
  XP_013973369 (Get FASTA)   NCBI Sequence Viewer  
  XP_022281376 (Get FASTA)   NCBI Sequence Viewer  
  XP_022281377 (Get FASTA)   NCBI Sequence Viewer  
  XP_022281378 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346804 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346806 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038346808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038408927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038408928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038408929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038408930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038408931 (Get FASTA)   NCBI Sequence Viewer  
  XP_038472809 (Get FASTA)   NCBI Sequence Viewer  
  XP_038472810 (Get FASTA)   NCBI Sequence Viewer  
  XP_038472811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038472812 (Get FASTA)   NCBI Sequence Viewer  
  XP_038472813 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538262 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538263 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538264 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538265 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000048700.2
  ENSCAFP00000052429.1
  ENSCAFP00030027352.1
  ENSCAFP00040012474.1
  ENSCAFP00040012654.1
  ENSCAFP00040012830.1
  ENSCAFP00845014286
  ENSCAFP00845014286.1
  ENSCAFP00845014454
  ENSCAFP00845014454.1
  ENSCAFP00845014662.1
RefSeq Acc Id: XP_013973369   ⟸   XM_014117894
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NNR5 (UniProtKB/TrEMBL),   A0A8I3RVS5 (UniProtKB/TrEMBL),   A0A8C0L766 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013973368   ⟸   XM_014117893
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022281377   ⟸   XM_022425669
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L766 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022281376   ⟸   XM_022425668
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022281378   ⟸   XM_022425670
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000052429   ⟸   ENSCAFT00000093903
Ensembl Acc Id: ENSCAFP00000048700   ⟸   ENSCAFT00000078811
Ensembl Acc Id: ENSCAFP00000004019   ⟸   ENSCAFT00000004346
Ensembl Acc Id: ENSCAFP00000065906   ⟸   ENSCAFT00000081784
RefSeq Acc Id: XP_038346805   ⟸   XM_038490877
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038346807   ⟸   XM_038490879
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038346804   ⟸   XM_038490876
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038346806   ⟸   XM_038490878
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038346808   ⟸   XM_038490880
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038472810   ⟸   XM_038616882
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038472812   ⟸   XM_038616884
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038472809   ⟸   XM_038616881
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038472811   ⟸   XM_038616883
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038472813   ⟸   XM_038616885
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038538262   ⟸   XM_038682334
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L766 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538264   ⟸   XM_038682336
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NNR5 (UniProtKB/TrEMBL),   A0A8I3RVS5 (UniProtKB/TrEMBL),   A0A8C0L766 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538261   ⟸   XM_038682333
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538263   ⟸   XM_038682335
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538265   ⟸   XM_038682337
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408928   ⟸   XM_038553000
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L766 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408930   ⟸   XM_038553002
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L766 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408927   ⟸   XM_038552999
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408929   ⟸   XM_038553001
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408931   ⟸   XM_038553003
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NF64 (UniProtKB/TrEMBL),   A0A8P0NYQ3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845014662   ⟸   ENSCAFT00845018778
Ensembl Acc Id: ENSCAFP00845014454   ⟸   ENSCAFT00845018528
Ensembl Acc Id: ENSCAFP00845014286   ⟸   ENSCAFT00845018307
Protein Domains
ABC transporter

Promoters
RGD ID:13685293
Promoter ID:EPDNEW_C3360
Type:multiple initiation site
Name:ABCA1_1
Description:ATP binding cassette subfamily A member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11160,869,678 - 60,869,738EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002727 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016974 UniProtKB/TrEMBL
  ENSCAFG00040007733 UniProtKB/TrEMBL
  ENSCAFG00845010374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000078811.2 UniProtKB/TrEMBL
  ENSCAFT00000093903.2 UniProtKB/TrEMBL
  ENSCAFT00030031342.1 UniProtKB/TrEMBL
  ENSCAFT00040014419.1 UniProtKB/TrEMBL
  ENSCAFT00040014634.1 UniProtKB/TrEMBL
  ENSCAFT00040014826.1 UniProtKB/TrEMBL
  ENSCAFT00845018307 ENTREZGENE
  ENSCAFT00845018307.1 UniProtKB/TrEMBL
  ENSCAFT00845018528 ENTREZGENE
  ENSCAFT00845018528.1 UniProtKB/TrEMBL
  ENSCAFT00845018778.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC2_TM UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  ABCA UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene ABCA1 ENTREZGENE
PANTHER PTHR19229 UniProtKB/TrEMBL
  PTHR19229:SF34 UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0L766 ENTREZGENE
  A0A8C0NNR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QQT1_CANLF UniProtKB/TrEMBL
  A0A8C0S0I8_CANLF UniProtKB/TrEMBL
  A0A8I3NF64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NHW8_CANLF UniProtKB/TrEMBL
  A0A8I3RVS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NYQ3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37422 ENTREZGENE