HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0) - Rat Genome Database
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Gene: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0) Canis lupus familiaris
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Symbol: HNRNPA0
Name: heterogeneous nuclear ribonucleoprotein A0
RGD ID: 12115802
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (inferred); protein kinase binding (inferred); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); inflammatory response (ortholog); response to lipopolysaccharide (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH gastric adenocarcinoma (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: HNRPA0
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1125,466,185 - 25,467,117 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11125,464,601 - 25,467,460 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
HNRNPA0
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1125,466,185 - 25,467,117 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11125,464,601 - 25,467,460 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
HNRNPA0
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5137,745,651 - 137,754,363 (-)EnsemblGRCh38hg38GRCh38
GRCh385137,745,651 - 137,754,363 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375137,087,073 - 137,090,039 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,114,972 - 137,117,938 (-)NCBINCBI36hg18NCBI36
Build 345137,114,973 - 137,117,938NCBI
Celera5133,208,508 - 133,211,474 (-)NCBI
Cytogenetic Map5q31.2NCBI
HuRef5132,277,733 - 132,280,699 (-)NCBIHuRef
CHM1_15136,519,671 - 136,522,637 (-)NCBICHM1_1
Hnrnpa0
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,273,693 - 58,276,370 (-)NCBIGRCm39mm39
GRCm381358,125,879 - 58,128,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,125,879 - 58,128,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,227,240 - 58,229,917 (-)NCBIGRCm37mm9NCBIm37
MGSCv361358,135,497 - 58,138,179 (-)NCBImm8
Celera1359,188,312 - 59,191,005 (-)NCBICelera
Cytogenetic Map13B1NCBI
Hnrnpa0
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.41712,452,030 - 12,452,914 (+)NCBIRGSC3.4rn4RGSC3.4
Celera176,617,417 - 6,618,097 (+)NCBICelera
Cytogenetic Map17p14NCBI
Hnrnpa0
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540832,718,736 - 32,719,409 (-)NCBIChiLan1.0ChiLan1.0
HNRNPA0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15139,275,249 - 139,278,250 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,277,004 - 139,277,939 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05133,132,030 - 133,140,771 (-)NCBIMhudiblu_PPA_v0panPan3
Hnrnpa0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365974,712,201 - 4,714,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2139,779,867 - 139,783,159 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12139,779,865 - 139,783,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,501,462 - 145,504,543 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA0
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,433,429 - 40,436,188 (-)NCBI
ChlSab1.1 Ensembl2340,435,002 - 40,435,913 (-)Ensembl
Hnrnpa0
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247339,265,784 - 9,271,559 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 16 5 6 12 2 10 4
Low 1 5 6 6 1 6 6 6 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000001730   ⟹   ENSCAFP00000001592
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1125,466,185 - 25,467,117 (-)Ensembl
RefSeq Acc Id: XM_005626573   ⟹   XP_005626630
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11125,464,601 - 25,467,460 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005626630   ⟸   XM_005626573
- UniProtKB: E2RBV8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000001592   ⟸   ENSCAFT00000001730
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000001592 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001730 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNPA0_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report cfa:481524 UniProtKB/TrEMBL
NCBI Gene HNRNPA0 ENTREZGENE
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt E2RBV8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:51722 ENTREZGENE