PNMA8A (PNMA family member 8A) - Rat Genome Database

Name: PNMA8A
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PNMA8A (PNMA family member 8A) Canis lupus familiaris

Analyze

Symbol:

PNMA8A

Name:

PNMA family member 8A

RGD ID:

12115725

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC102151906; paraneoplastic antigen-like protein 8A; PNMA-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PNMA8A (PNMA family member 8A)	HGNC	EggNOG, Ensembl, HomoloGene, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Pnma8a (PNMA family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pnma8a (PNMA family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PNMA8A (PNMA family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pnma8a (paraneoplastic Ma antigen family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PNMA8A (PNMA family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PNMA8A (PNMA family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pnma8a (PNMA family member 8A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	109,401,900 - 109,405,955 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	108,881,069 - 108,885,124 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	109,928,301 - 109,932,363 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	109,604,585 - 109,608,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	109,238,978 - 109,243,024 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	110,107,867 - 110,111,923 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

References

Genomics

Comparative Map Data

PNMA8A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	109,401,900 - 109,405,955 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	108,881,069 - 108,885,124 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	109,928,301 - 109,932,363 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	109,604,585 - 109,608,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	109,238,978 - 109,243,024 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	110,107,867 - 110,111,923 (-)	NCBI		UU_Cfam_GSD_1.0

PNMA8A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	46,466,503 - 46,471,563 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	46,466,491 - 46,471,563 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	46,969,760 - 46,974,820 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	51,661,588 - 51,666,660 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	43,773,279 - 43,778,352 (-)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	43,394,987 - 43,400,070 (-)	NCBI		HuRef
CHM1_1	19	46,971,319 - 46,976,391 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	49,292,102 - 49,297,163 (-)	NCBI		T2T-CHM13v2.0

Pnma8a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	16,683,325 - 16,698,532 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	16,693,604 - 16,698,532 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	16,949,950 - 16,964,607 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	16,959,679 - 16,964,607 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	17,545,144 - 17,547,669 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	16,118,317 - 16,120,842 (+)	NCBI		MGSCv36	mm8
Celera	7	14,166,173 - 14,168,698 (+)	NCBI		Celera
Cytogenetic Map	7	A2	NCBI
cM Map	7	9.15	NCBI

Pnma8a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	86,763,475 - 86,771,117 (+)	NCBI		GRCr8
mRatBN7.2	1	77,629,272 - 77,643,156 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	77,639,423 - 77,642,082 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	83,019,834 - 83,022,493 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	3,698,899 - 3,701,558 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	84,774,948 - 84,777,607 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	78,883,239 - 78,896,551 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	78,893,271 - 78,895,930 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	80,140,729 - 80,144,372 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	77,294,408 - 77,297,067 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	77,372,999 - 77,374,894 (+)	NCBI
Celera	1	72,124,520 - 72,127,179 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

PNMA8A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	52,610,925 - 52,616,390 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	54,481,554 - 54,486,528 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	43,453,364 - 43,458,338 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	51,982,909 - 51,987,903 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	51,982,909 - 51,987,903 (-)	Ensembl	panpan1.1		panPan2

Pnma8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	18,754,653 - 18,758,608 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	372,565 - 375,131 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	372,772 - 376,737 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNMA8A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	52,429,219 - 52,433,664 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	47,732,099 - 47,735,214 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PNMA8A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	39,845,075 - 39,848,085 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	39,842,678 - 39,848,066 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	19,526,711 - 19,531,740 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pnma8a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	7,023,142 - 7,027,502 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	7,023,649 - 7,027,405 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PNMA8A
77 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022405152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038525548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038589957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038653668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_038461007 ⟹ XP_038316935

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	1	108,881,069 - 108,885,124 (-)	NCBI

RefSeq Acc Id:

XM_038468835 ⟹ XP_038324763

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	109,604,585 - 109,608,639 (-)	NCBI

RefSeq Acc Id:

XM_038525548 ⟹ XP_038381476

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	110,107,867 - 110,111,923 (-)	NCBI

RefSeq Acc Id:

XM_038589957 ⟹ XP_038445885

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	109,238,978 - 109,243,024 (-)	NCBI

RefSeq Acc Id:

XM_038653668 ⟹ XP_038509596

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	109,928,301 - 109,932,363 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038316935	(Get FASTA)	NCBI Sequence Viewer
	XP_038324763	(Get FASTA)	NCBI Sequence Viewer
	XP_038381476	(Get FASTA)	NCBI Sequence Viewer
	XP_038445885	(Get FASTA)	NCBI Sequence Viewer
	XP_038509596	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00040005055.1

RefSeq Acc Id:	XP_038324763 ⟸ XM_038468835
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038445885 ⟸ XM_038589957
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038509596 ⟸ XM_038653668
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q0B7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038316935 ⟸ XM_038461007
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q0B7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038381476 ⟸ XM_038525548
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q0B7 (UniProtKB/TrEMBL)

Protein Domains

Paraneoplastic antigen Ma-like N-terminal Paraneoplastic antigen-like protein 8A C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00040003082	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00040005861.1	UniProtKB/TrEMBL
InterPro	PNM8A_C	UniProtKB/TrEMBL
	PNMA	UniProtKB/TrEMBL
	PNMA_N	UniProtKB/TrEMBL
NCBI Gene	LOC102151906	ENTREZGENE
PANTHER	PARANEOPLASTIC ANTIGEN	UniProtKB/TrEMBL
	PARANEOPLASTIC ANTIGEN-LIKE PROTEIN 8A	UniProtKB/TrEMBL
Pfam	PNM8A	UniProtKB/TrEMBL
	PNMA_N	UniProtKB/TrEMBL
UniProt	A0A8C0Q0B7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-01-12	PNMA8A	PNMA family member 8A	LOC102151906	paraneoplastic antigen-like protein 8A	Symbol and/or name change	5135510	APPROVED
2017-09-12	LOC102151906	paraneoplastic antigen-like protein 8A		PNMA-like protein 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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