RASA1 (RAS p21 protein activator 1) - Rat Genome Database

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Gene: RASA1 (RAS p21 protein activator 1) Canis lupus familiaris
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Symbol: RASA1
Name: RAS p21 protein activator 1
RGD ID: 12113217
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); kinase binding (ortholog); platelet-derived growth factor receptor binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); arteriovenous malformation (ortholog); basal cell carcinoma (ortholog); FOUND IN nuclear membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras GTPase-activating protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,068,182 - 21,177,288 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,054,930 - 21,176,757 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha322,433,878 - 22,542,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0320,976,854 - 21,085,576 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl320,963,599 - 21,086,379 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1320,947,976 - 21,056,165 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0320,910,527 - 21,018,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0321,202,248 - 21,310,549 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:16423831   PMID:22301074  


Genomics

Comparative Map Data
RASA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,068,182 - 21,177,288 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,054,930 - 21,176,757 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha322,433,878 - 22,542,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0320,976,854 - 21,085,576 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl320,963,599 - 21,086,379 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1320,947,976 - 21,056,165 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0320,910,527 - 21,018,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0321,202,248 - 21,310,549 (-)NCBIUU_Cfam_GSD_1.0
RASA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38587,267,883 - 87,391,916 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl587,267,883 - 87,391,931 (+)EnsemblGRCh38hg38GRCh38
GRCh37586,563,700 - 86,687,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36586,599,907 - 86,723,489 (+)NCBINCBI36Build 36hg18NCBI36
Build 34586,600,521 - 86,723,488NCBI
Celera582,456,373 - 82,579,983 (+)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef581,768,403 - 81,891,908 (+)NCBIHuRef
CHM1_1585,997,132 - 86,120,771 (+)NCBICHM1_1
T2T-CHM13v2.0587,749,006 - 87,873,021 (+)NCBIT2T-CHM13v2.0
Rasa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391385,362,893 - 85,437,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1385,362,899 - 85,437,249 (-)EnsemblGRCm39 Ensembl
GRCm381385,214,699 - 85,289,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1385,214,780 - 85,289,130 (-)EnsemblGRCm38mm10GRCm38
MGSCv371385,354,304 - 85,429,091 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361385,689,136 - 85,729,574 (-)NCBIMGSCv36mm8
Celera1387,446,946 - 87,523,497 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.05NCBI
Rasa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8217,593,136 - 17,676,707 (-)NCBIGRCr8
mRatBN7.2215,857,704 - 15,940,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl215,857,980 - 15,940,854 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx222,959,727 - 23,040,229 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0221,059,980 - 21,140,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0215,733,780 - 15,814,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0213,617,021 - 13,696,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl213,616,822 - 13,696,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0213,470,580 - 13,551,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4214,203,815 - 14,287,824 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1214,124,183 - 14,208,193 (-)NCBI
Celera212,124,725 - 12,204,755 (-)NCBICelera
Cytogenetic Map2q11NCBI
Rasa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541823,807,740 - 23,897,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541823,807,740 - 23,897,699 (-)NCBIChiLan1.0ChiLan1.0
RASA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2428,003,513 - 28,131,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1526,157,126 - 26,284,812 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0527,980,907 - 28,104,368 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1528,115,159 - 28,239,854 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl528,115,159 - 28,240,321 (-)Ensemblpanpan1.1panPan2
Rasa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213176,687,034 - 176,786,016 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364695,839,743 - 5,932,021 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364695,839,560 - 5,933,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl294,878,911 - 94,993,450 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1294,879,615 - 94,992,725 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2297,399,815 - 97,512,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RASA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1481,249,851 - 81,371,486 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl481,249,805 - 81,370,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604930,268,183 - 30,393,793 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rasa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247436,788,108 - 6,882,223 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247436,750,476 - 6,882,556 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RASA1
951 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 21 5 6 5 6 12 8 10 6
Low 4 1 1 1 6
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000013368   ⟹   ENSCAFP00000012370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl321,069,033 - 21,176,757 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000061683   ⟹   ENSCAFP00000064908
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl321,068,252 - 21,176,757 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000062367   ⟹   ENSCAFP00000052732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl321,071,194 - 21,176,757 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063575   ⟹   ENSCAFP00000046016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl321,054,930 - 21,176,757 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000076754   ⟹   ENSCAFP00000057235
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl321,069,033 - 21,175,947 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090464   ⟹   ENSCAFP00000050763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl321,068,765 - 21,176,757 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845033741   ⟹   ENSCAFP00845026411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl320,963,599 - 21,086,379 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845033962   ⟹   ENSCAFP00845026578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl320,975,960 - 21,086,379 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034163   ⟹   ENSCAFP00845026745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl320,975,960 - 21,084,811 (-)Ensembl
RefSeq Acc Id: XM_038471120   ⟹   XP_038327048
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha322,433,878 - 22,542,367 (-)NCBI
RefSeq Acc Id: XM_038471467   ⟹   XP_038327395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1320,947,976 - 21,056,165 (-)NCBI
RefSeq Acc Id: XM_038532397   ⟹   XP_038388325
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0321,202,248 - 21,310,549 (-)NCBI
RefSeq Acc Id: XM_038596677   ⟹   XP_038452605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0320,910,527 - 21,018,703 (-)NCBI
RefSeq Acc Id: XM_038660885   ⟹   XP_038516813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0320,976,854 - 21,085,576 (-)NCBI
RefSeq Acc Id: XR_005322602
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha322,435,927 - 22,542,367 (-)NCBI
RefSeq Acc Id: ENSCAFP00000046016   ⟸   ENSCAFT00000063575
RefSeq Acc Id: ENSCAFP00000057235   ⟸   ENSCAFT00000076754
RefSeq Acc Id: ENSCAFP00000052732   ⟸   ENSCAFT00000062367
RefSeq Acc Id: ENSCAFP00000012370   ⟸   ENSCAFT00000013368
RefSeq Acc Id: ENSCAFP00000050763   ⟸   ENSCAFT00000090464
RefSeq Acc Id: ENSCAFP00000064908   ⟸   ENSCAFT00000061683
RefSeq Acc Id: XP_038327395   ⟸   XM_038471467
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452605   ⟸   XM_038596677
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516813   ⟸   XM_038660885
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKC1 (UniProtKB/TrEMBL),   A0A8I3PDZ1 (UniProtKB/TrEMBL),   A0A8C0JUL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038327048   ⟸   XM_038471120
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MKC1 (UniProtKB/TrEMBL),   A0A8I3PDZ1 (UniProtKB/TrEMBL),   A0A8C0JUL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388325   ⟸   XM_038532397
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JUL8 (UniProtKB/TrEMBL),   A0A8C0MKC1 (UniProtKB/TrEMBL),   A0A8I3PDZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845026578   ⟸   ENSCAFT00845033962
RefSeq Acc Id: ENSCAFP00845026411   ⟸   ENSCAFT00845033741
RefSeq Acc Id: ENSCAFP00845026745   ⟸   ENSCAFT00845034163
Protein Domains
C2   PH   Ras-GAP   SH2   SH3

Promoters
RGD ID:13682686
Promoter ID:EPDNEW_C754
Type:multiple initiation site
Name:RASA1_1
Description:RAS p21 protein activator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1321,177,293 - 21,177,353EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008410 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007840 UniProtKB/TrEMBL
  ENSCAFG00040002827 UniProtKB/TrEMBL
  ENSCAFG00845018838 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000061683.2 UniProtKB/TrEMBL
  ENSCAFT00000063575.2 UniProtKB/TrEMBL
  ENSCAFT00000076754.2 UniProtKB/TrEMBL
  ENSCAFT00030014829.1 UniProtKB/TrEMBL
  ENSCAFT00030014987.1 UniProtKB/TrEMBL
  ENSCAFT00030015182.1 UniProtKB/TrEMBL
  ENSCAFT00040005723.1 UniProtKB/TrEMBL
  ENSCAFT00040005779.1 UniProtKB/TrEMBL
  ENSCAFT00040005798.1 UniProtKB/TrEMBL
  ENSCAFT00845033741.1 UniProtKB/TrEMBL
  ENSCAFT00845033962 ENTREZGENE
  ENSCAFT00845033962.1 UniProtKB/TrEMBL
  ENSCAFT00845034163.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  RasGAP_C_SH2 UniProtKB/TrEMBL
  RasGAP_CS UniProtKB/TrEMBL
  RasGAP_dom UniProtKB/TrEMBL
  RasGAP_N_SH2 UniProtKB/TrEMBL
  RasGAP_SH3 UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene RASA1 ENTREZGENE
PANTHER PTHR10194 UniProtKB/TrEMBL
  RAS GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  RasGAP UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
  RAS_GTPASE_ACTIV_1 UniProtKB/TrEMBL
  RAS_GTPASE_ACTIV_2 UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART RasGAP UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt A0A8C0JUL8 ENTREZGENE
  A0A8C0MKC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MND0_CANLF UniProtKB/TrEMBL
  A0A8C0PWW4_CANLF UniProtKB/TrEMBL
  A0A8C0Q2R9_CANLF UniProtKB/TrEMBL
  A0A8I3NXG7_CANLF UniProtKB/TrEMBL
  A0A8I3PDZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S3Y4_CANLF UniProtKB/TrEMBL
  A0A8P0TGC8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45359 ENTREZGENE