ISM1 (isthmin 1) - Rat Genome Database

Name: ISM1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ISM1 (isthmin 1) Canis lupus familiaris

Analyze

Symbol:

ISM1

Name:

isthmin 1

RGD ID:

12112508

Description:

INVOLVED IN negative regulation of angiogenesis (inferred); ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

isthmin 1 homolog; isthmin-1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ISM1 (isthmin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Ism1 (isthmin 1, angiogenesis inhibitor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ism1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ism1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ISM1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ism1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ISM1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ISM1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ism1 (isthmin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	9,323,739 - 9,395,224 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	9,324,667 - 9,396,127 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	9,135,941 - 9,207,266 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	9,737,861 - 9,809,264 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	9,737,873 - 9,809,223 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	9,347,542 - 9,418,926 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	9,432,990 - 9,504,312 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	9,781,971 - 9,853,413 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of angiogenesis (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ISM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	9,323,739 - 9,395,224 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	9,324,667 - 9,396,127 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	9,135,941 - 9,207,266 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	9,737,861 - 9,809,264 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	9,737,873 - 9,809,223 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	9,347,542 - 9,418,926 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	9,432,990 - 9,504,312 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	9,781,971 - 9,853,413 (-)	NCBI		UU_Cfam_GSD_1.0

ISM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	13,221,274 - 13,326,723 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	13,221,274 - 13,300,651 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	13,201,921 - 13,281,298 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	13,150,418 - 13,229,297 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	20	13,272,473 - 13,351,368 (+)	NCBI		Celera
Cytogenetic Map	20	p12.1	NCBI
HuRef	20	13,156,393 - 13,235,550 (+)	NCBI		HuRef
CHM1_1	20	13,202,496 - 13,281,372 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	13,264,581 - 13,370,088 (+)	NCBI		T2T-CHM13v2.0

Ism1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	139,515,169 - 139,600,500 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	139,520,098 - 139,600,501 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	139,673,359 - 139,758,581 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	139,678,178 - 139,758,581 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	139,503,914 - 139,584,317 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	139,368,424 - 139,450,022 (+)	NCBI		MGSCv36	mm8
Celera	2	140,855,175 - 140,934,781 (+)	NCBI		Celera
Cytogenetic Map	2	F3	NCBI
cM Map	2	69.06	NCBI

Ism1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	147,476,983 - 147,555,900 (+)	NCBI		GRCr8
mRatBN7.2	3	127,023,296 - 127,102,228 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	127,021,865 - 127,101,894 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	130,881,336 - 130,959,063 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	139,465,426 - 139,543,155 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	137,168,553 - 137,246,297 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	132,736,433 - 132,808,544 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	139,194,822 - 139,265,719 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	127,871,047 - 127,932,167 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	125,675,807 - 125,753,500 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

Ism1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	22,723,079 - 22,790,115 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	22,722,534 - 22,789,730 (+)	NCBI	ChiLan1.0	ChiLan1.0

ISM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	14,103,639 - 14,188,121 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	14,104,951 - 14,184,953 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	13,180,103 - 13,260,294 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	13,166,095 - 13,245,890 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	13,166,083 - 13,245,890 (+)	Ensembl	panpan1.1		panPan2

Ism1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	158,103,110 - 158,173,883 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	6,534,475 - 6,605,247 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	6,534,475 - 6,605,216 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ISM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	21,948,361 - 22,033,742 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	21,948,351 - 22,037,023 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	24,519,081 - 24,604,821 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ISM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	42,123,511 - 42,201,098 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	42,172,595 - 42,201,859 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	2,388,881 - 2,465,712 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ism1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	14,186,973 - 14,264,124 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	14,187,008 - 14,262,572 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ISM1
689 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	2				1		6		6		5	4
Low	3		22	6	5	6		1	6		5	2
Below cutoff		5						5		8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005634779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038433122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038433123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038508313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038508314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038571590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038571591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038635844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038635845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_542888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000009028 ⟹ ENSCAFP00000008373

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	9,324,942 - 9,396,127 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000077159 ⟹ ENSCAFP00000044500

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	9,324,667 - 9,394,860 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000078051 ⟹ ENSCAFP00000061961

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	9,324,667 - 9,364,544 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000089040 ⟹ ENSCAFP00000043281

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	24	9,324,667 - 9,396,020 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845040890 ⟹ ENSCAFP00845032022

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	9,737,873 - 9,809,223 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845040931 ⟹ ENSCAFP00845032059

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	9,737,873 - 9,764,901 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845040972 ⟹ ENSCAFP00845032096

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	9,737,878 - 9,808,978 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845041020 ⟹ ENSCAFP00845032138

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	9,738,226 - 9,808,918 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845041066 ⟹ ENSCAFP00845032181

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	24	9,739,064 - 9,809,223 (-)	Ensembl

RefSeq Acc Id:

XM_005634779 ⟹ XP_005634836

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	24	9,323,739 - 9,394,802 (-)	NCBI
Dog10K_Boxer_Tasha	24	9,135,941 - 9,206,835 (-)	NCBI

Sequence:

show sequence

GGCGCGAGGCTCGGGATGGGCGAAGGAGTGTGTGGAGTACGCAATAACCTCCACGTGGAAAGTG
ACTCTACATCAGAAACAAGCTTTCCTTTCTCTAAAGAAGCAGCAGGGGAACATCTGGACCATCA
GGCTGCACATCAACCCTTCCCCAGACAGCGATTCCAGCAAGAGCCTGGGCACCCTTCACTGCAA
AGAGATAGCCCCAGATCCTTTCTCCTTGATCTACCAAACTTTCCAGATCTTTCCAAAGCTGATA
TCAATGGGCAGAATCCAAATATCCAGGTCACCATAGAGGTGGTGGATGGTCCTGACTCTGAAGC
AGATAAAGATCAGCACCCGGAGAATAAGCCCAGCTGGTCAGTCCCATCCCCTGACTGGAGGGCC
TGGTGGCAGAGGTCCTTGTCCTTGACGAGGGCAAACAGCGGGGATCAAGACTATAAGTACGACA
GTACCTCAGACGACAGCAACTTCCTCAACCCCCCCAGGGGGTGGGACCGTCCAGCCCCAGGCCA
CCGGACTTTTGAGGCCAAAGAGCAGCCAGAATATGATTCCACAGATGGTGAGGGTGACTGGAGC
CTTTGGTCTGTCTGCAGTGTCACCTGTGGGAACGGCAACCAGAAACGGACCAGGTCTTGTGGCT
ACGCATGTACCGCAACAGAATCTAGGACATGTGACCGTCCAAACTGCCCAGGAATTGAAGACAC
CTTCAGGACAGCTGCCACCGAAGTGAGTCTGCTTGCGGGAAGTGAGGAGTTTAATGCCACCAAA
CTATTTGAAGTTGACACGGACAGCTGTGAGCGGTGGATGAGCTGCAAAAGTGAGTTCTTACAGA
AGTACATGCACAAGGTGATCAACGACCTGCCCAGCTGCCCCTGCTCCTACCCCACCGAGGTGGC
CTACAGCACGGCGGACATCTTCGACCGCATCAAGCGCAAGGACTTCCGCTGGAAGGACGCCAGC
GGGCCCAAGGAGAAGCTGGAGATCTACAAGCCCACGGCCCGCTACTGCATCCGCTCCATGCTGT
CCCTGGAGAGCACCACGCTGGCAGCCCAGCACTGTTGCTACGGCGACAACATGCAGCTCATCAC
CAGGGGCAAAGGCGCGGGGACGCCCAACCTCATCAGCACCGAGTTCTCGGCCGAGCTCCACTAC
AAGGTGGACGTCCTGCCCTGGATTATCTGCAAGGGCGACTGGAGCAGATACAACGAGGCGCGGC
CTCCCAACAACGGACAGAAGTGCACGGAGAGCCCCTCGGACGAAGACTACATCAAGCAGTTCCA
AGAGGCCAGGGAGTACTAAGGAGATGCCACCTCGGGTATATGTGACACAGACGCACTGCACTGA
TGTCGCCGGGGCAGAGGTGCGCCTACCCGCATCCATGTCTAGGTGTATATACCACATGGGCATT
TTTCATCAATCACGCTAGGGGTGTGCGCCAGGCCCCAGTGGCTGCCCTCTGAAGCCACCTCGCC
ACCCGAGATGCCCCTGGAGCTCCTTGGAATTCCTCGGGGGGGAGATGTCGGCGGCAGGACGAGG
ACAGAGGAGTCAGAAGAAGAACCTGGAAGCCATAGCAGGTGGGATTCGATGCGCACCCAGATCC
AGTGTTTCCTAGAGAAGCAAAGCGGAAAAGACCGAGCTGTAAACGTTATATGCAGTTTTTATAT
ATAACTTATTTAATATGAATGTGACTTAAGCATAACCTTTTCGCTGGAGTTGTGAAACTGTTTA
ATCACTTCTGTGAGAGTTCAGACAGGGGCTAAAGGATGTGGGAGAGAAAGGGAATTTTGGAATT
ATTTTTTTTTAACTAAGTAACTCAACAGAAGTGTATCAAAACAAGAAAACACCCACTTTAAACC
AAATGTTCTTTAGTCATGAGGCACCTTGCTGGAGTCTCGGCTTCCCGAATGCCCTTGCCTAAGA
TTGGATAGGGGGTGCGGGGCACACGGGTATTTTAGGGGCACATCTGAGGACTGATTTTAAATAG
GCTTTAAAATAAAAGGCCAATATTAGCATAACGCTATAATTCTACTAAAAGGCTTCAGAGTGGC
AGAAGTTCTGCTTATGTCTTAGTAGGTTCAGAAGGCTGCAGGAAGGTCAGACATAAAAACAGGT
AGTAGCACTTTTCCAAAGAAAAAAAGAAGCAAAATAAATGGGAAAAGAACATGGACCTCATTTC
ATCTATTTTAGTCTAATACCATTGTAACATTTTTTTACTCCGCCAATATATTCCCAGTAAATAC
ATATAGAAAGAGTAGGAGGACTCAAGTCTAGAAAATCCTAATTGTTTATGTTTTAAGAAACGAA
AAAAAAACTACATTATTTTTGTAAAGTATTTATTGAGTCATTGAGTCTTGTGCATCAAGCGATT
GTGATATGACCTGGTTCTGTAGTGTGGAACTTAGGACAAATAAAGAGTTTGTTGTTATGCAATC
TTTACTTGCAAAACTCCAGGAGAAGAGAATATATACTAAAATCATAATAAAATGTGTTACCTGC
AATAAA

hide sequence

RefSeq Acc Id:

XM_038433122 ⟹ XP_038289050

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	24	9,737,861 - 9,809,264 (-)	NCBI

RefSeq Acc Id:

XM_038433123 ⟹ XP_038289051

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	24	9,737,861 - 9,808,833 (-)	NCBI

RefSeq Acc Id:

XM_038508313 ⟹ XP_038364241

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	24	9,347,542 - 9,418,926 (-)	NCBI

RefSeq Acc Id:

XM_038508314 ⟹ XP_038364242

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	24	9,347,542 - 9,418,495 (-)	NCBI

RefSeq Acc Id:

XM_038571590 ⟹ XP_038427518

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	24	9,781,971 - 9,853,413 (-)	NCBI

RefSeq Acc Id:

XM_038571591 ⟹ XP_038427519

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	24	9,781,971 - 9,852,982 (-)	NCBI

RefSeq Acc Id:

XM_038635844 ⟹ XP_038491772

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	24	9,432,990 - 9,504,312 (-)	NCBI

RefSeq Acc Id:

XM_038635845 ⟹ XP_038491773

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	24	9,432,990 - 9,503,881 (-)	NCBI

RefSeq Acc Id:

XM_542888 ⟹ XP_542888

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	24	9,323,739 - 9,395,224 (-)	NCBI
Dog10K_Boxer_Tasha	24	9,135,941 - 9,207,266 (-)	NCBI

Sequence:

show sequence

CCGCCGCGCCGGGTCCTAAAGCCGCGCGCCTCAAGAGGATGGTGCGCCTGGCGGCGGAGCTGCT
GTTGCTGCTGGGGCTGCTGCTGCTCACGCTGCACATCACGGTGCTGCGCGGCTCGGGAGCCGCC
GACGGGCCCGACGCGGCCGCGGGCAACGCCAGCCGGACCCAGCTGCAGAATAACCTCCACGTGG
AAAGTGACTCTACATCAGAAACAAGCTTTCCTTTCTCTAAAGAAGCAGCAGGGGAACATCTGGA
CCATCAGGCTGCACATCAACCCTTCCCCAGACAGCGATTCCAGCAAGAGCCTGGGCACCCTTCA
CTGCAAAGAGATAGCCCCAGATCCTTTCTCCTTGATCTACCAAACTTTCCAGATCTTTCCAAAG
CTGATATCAATGGGCAGAATCCAAATATCCAGGTCACCATAGAGGTGGTGGATGGTCCTGACTC
TGAAGCAGATAAAGATCAGCACCCGGAGAATAAGCCCAGCTGGTCAGTCCCATCCCCTGACTGG
AGGGCCTGGTGGCAGAGGTCCTTGTCCTTGACGAGGGCAAACAGCGGGGATCAAGACTATAAGT
ACGACAGTACCTCAGACGACAGCAACTTCCTCAACCCCCCCAGGGGGTGGGACCGTCCAGCCCC
AGGCCACCGGACTTTTGAGGCCAAAGAGCAGCCAGAATATGATTCCACAGATGGTGAGGGTGAC
TGGAGCCTTTGGTCTGTCTGCAGTGTCACCTGTGGGAACGGCAACCAGAAACGGACCAGGTCTT
GTGGCTACGCATGTACCGCAACAGAATCTAGGACATGTGACCGTCCAAACTGCCCAGGAATTGA
AGACACCTTCAGGACAGCTGCCACCGAAGTGAGTCTGCTTGCGGGAAGTGAGGAGTTTAATGCC
ACCAAACTATTTGAAGTTGACACGGACAGCTGTGAGCGGTGGATGAGCTGCAAAAGTGAGTTCT
TACAGAAGTACATGCACAAGGTGATCAACGACCTGCCCAGCTGCCCCTGCTCCTACCCCACCGA
GGTGGCCTACAGCACGGCGGACATCTTCGACCGCATCAAGCGCAAGGACTTCCGCTGGAAGGAC
GCCAGCGGGCCCAAGGAGAAGCTGGAGATCTACAAGCCCACGGCCCGCTACTGCATCCGCTCCA
TGCTGTCCCTGGAGAGCACCACGCTGGCAGCCCAGCACTGTTGCTACGGCGACAACATGCAGCT
CATCACCAGGGGCAAAGGCGCGGGGACGCCCAACCTCATCAGCACCGAGTTCTCGGCCGAGCTC
CACTACAAGGTGGACGTCCTGCCCTGGATTATCTGCAAGGGCGACTGGAGCAGATACAACGAGG
CGCGGCCTCCCAACAACGGACAGAAGTGCACGGAGAGCCCCTCGGACGAAGACTACATCAAGCA
GTTCCAAGAGGCCAGGGAGTACTAAGGAGATGCCACCTCGGGTATATGTGACACAGACGCACTG
CACTGATGTCGCCGGGGCAGAGGTGCGCCTACCCGCATCCATGTCTAGGTGTATATACCACATG
GGCATTTTTCATCAATCACGCTAGGGGTGTGCGCCAGGCCCCAGTGGCTGCCCTCTGAAGCCAC
CTCGCCACCCGAGATGCCCCTGGAGCTCCTTGGAATTCCTCGGGGGGGAGATGTCGGCGGCAGG
ACGAGGACAGAGGAGTCAGAAGAAGAACCTGGAAGCCATAGCAGGTGGGATTCGATGCGCACCC
AGATCCAGTGTTTCCTAGAGAAGCAAAGCGGAAAAGACCGAGCTGTAAACGTTATATGCAGTTT
TTATATATAACTTATTTAATATGAATGTGACTTAAGCATAACCTTTTCGCTGGAGTTGTGAAAC
TGTTTAATCACTTCTGTGAGAGTTCAGACAGGGGCTAAAGGATGTGGGAGAGAAAGGGAATTTT
GGAATTATTTTTTTTTAACTAAGTAACTCAACAGAAGTGTATCAAAACAAGAAAACACCCACTT
TAAACCAAATGTTCTTTAGTCATGAGGCACCTTGCTGGAGTCTCGGCTTCCCGAATGCCCTTGC
CTAAGATTGGATAGGGGGTGCGGGGCACACGGGTATTTTAGGGGCACATCTGAGGACTGATTTT
AAATAGGCTTTAAAATAAAAGGCCAATATTAGCATAACGCTATAATTCTACTAAAAGGCTTCAG
AGTGGCAGAAGTTCTGCTTATGTCTTAGTAGGTTCAGAAGGCTGCAGGAAGGTCAGACATAAAA
ACAGGTAGTAGCACTTTTCCAAAGAAAAAAAGAAGCAAAATAAATGGGAAAAGAACATGGACCT
CATTTCATCTATTTTAGTCTAATACCATTGTAACATTTTTTTACTCCGCCAATATATTCCCAGT
AAATACATATAGAAAGAGTAGGAGGACTCAAGTCTAGAAAATCCTAATTGTTTATGTTTTAAGA
AACGAAAAAAAAACTACATTATTTTTGTAAAGTATTTATTGAGTCATTGAGTCTTGTGCATCAA
GCGATTGTGATATGACCTGGTTCTGTAGTGTGGAACTTAGGACAAATAAAGAGTTTGTTGTTAT
GCAATCTTTACTTGCAAAACTCCAGGAGAAGAGAATATATACTAAAATCATAATAAAATGTGTT
ACCTGCAATAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005634836	(Get FASTA)	NCBI Sequence Viewer
	XP_038289050	(Get FASTA)	NCBI Sequence Viewer
	XP_038289051	(Get FASTA)	NCBI Sequence Viewer
	XP_038364241	(Get FASTA)	NCBI Sequence Viewer
	XP_038364242	(Get FASTA)	NCBI Sequence Viewer
	XP_038427518	(Get FASTA)	NCBI Sequence Viewer
	XP_038427519	(Get FASTA)	NCBI Sequence Viewer
	XP_038491772	(Get FASTA)	NCBI Sequence Viewer
	XP_038491773	(Get FASTA)	NCBI Sequence Viewer
	XP_542888	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000008373.5
	ENSCAFP00000043281.1
	ENSCAFP00000044500.1
	ENSCAFP00000061961.2
	ENSCAFP00000075241.1
	ENSCAFP00030028100.1
	ENSCAFP00040009681.1
	ENSCAFP00040009701.1
	ENSCAFP00040009721.1
	ENSCAFP00845032022
	ENSCAFP00845032022.1
	ENSCAFP00845032059
	ENSCAFP00845032059.1
	ENSCAFP00845032096.1
	ENSCAFP00845032138.1
	ENSCAFP00845032181.1

RefSeq Acc Id:	XP_542888 ⟸ XM_542888
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QCX1 (UniProtKB/TrEMBL), A0A8I3PIF5 (UniProtKB/TrEMBL), A0A8C0Q7L4 (UniProtKB/TrEMBL), A0A8I3PRZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRLAAELLLLLGLLLLTLHITVLRGSGAADGPDAAAGNASRTQLQNNLHVESDSTSETSFPFS KEAAGEHLDHQAAHQPFPRQRFQQEPGHPSLQRDSPRSFLLDLPNFPDLSKADINGQNPNIQVT IEVVDGPDSEADKDQHPENKPSWSVPSPDWRAWWQRSLSLTRANSGDQDYKYDSTSDDSNFLNP PRGWDRPAPGHRTFEAKEQPEYDSTDGEGDWSLWSVCSVTCGNGNQKRTRSCGYACTATESRTC DRPNCPGIEDTFRTAATEVSLLAGSEEFNATKLFEVDTDSCERWMSCKSEFLQKYMHKVINDLP SCPCSYPTEVAYSTADIFDRIKRKDFRWKDASGPKEKLEIYKPTARYCIRSMLSLESTTLAAQH CCYGDNMQLITRGKGAGTPNLISTEFSAELHYKVDVLPWIICKGDWSRYNEARPPNNGQKCTES PSDEDYIKQFQEAREY hide sequence

RefSeq Acc Id:	XP_005634836 ⟸ XM_005634779
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q8B8 (UniProtKB/TrEMBL), A0A8I3S6M7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGEGVCGVRNNLHVESDSTSETSFPFSKEAAGEHLDHQAAHQPFPRQRFQQEPGHPSLQRDSPR SFLLDLPNFPDLSKADINGQNPNIQVTIEVVDGPDSEADKDQHPENKPSWSVPSPDWRAWWQRS LSLTRANSGDQDYKYDSTSDDSNFLNPPRGWDRPAPGHRTFEAKEQPEYDSTDGEGDWSLWSVC SVTCGNGNQKRTRSCGYACTATESRTCDRPNCPGIEDTFRTAATEVSLLAGSEEFNATKLFEVD TDSCERWMSCKSEFLQKYMHKVINDLPSCPCSYPTEVAYSTADIFDRIKRKDFRWKDASGPKEK LEIYKPTARYCIRSMLSLESTTLAAQHCCYGDNMQLITRGKGAGTPNLISTEFSAELHYKVDVL PWIICKGDWSRYNEARPPNNGQKCTESPSDEDYIKQFQEAREY hide sequence

RefSeq Acc Id:

ENSCAFP00000044500 ⟸ ENSCAFT00000077159

RefSeq Acc Id:

ENSCAFP00000008373 ⟸ ENSCAFT00000009028

RefSeq Acc Id:

ENSCAFP00000061961 ⟸ ENSCAFT00000078051

RefSeq Acc Id:

ENSCAFP00000043281 ⟸ ENSCAFT00000089040

RefSeq Acc Id:	XP_038364241 ⟸ XM_038508313
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038364242 ⟸ XM_038508314
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038491772 ⟸ XM_038635844
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038491773 ⟸ XM_038635845
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038289050 ⟸ XM_038433122
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QCX1 (UniProtKB/TrEMBL), A0A8I3PIF5 (UniProtKB/TrEMBL), A0A8C0Q7L4 (UniProtKB/TrEMBL), A0A8I3PRZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038289051 ⟸ XM_038433123
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q8B8 (UniProtKB/TrEMBL), A0A8I3S6M7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038427518 ⟸ XM_038571590
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q7L4 (UniProtKB/TrEMBL), A0A8C0QCX1 (UniProtKB/TrEMBL), A0A8I3PIF5 (UniProtKB/TrEMBL), A0A8I3PRZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038427519 ⟸ XM_038571591
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0Q8B8 (UniProtKB/TrEMBL), A0A8I3S6M7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845032181 ⟸ ENSCAFT00845041066

RefSeq Acc Id:

ENSCAFP00845032096 ⟸ ENSCAFT00845040972

RefSeq Acc Id:

ENSCAFP00845032059 ⟸ ENSCAFT00845040931

RefSeq Acc Id:

ENSCAFP00845032138 ⟸ ENSCAFT00845041020

RefSeq Acc Id:

ENSCAFP00845032022 ⟸ ENSCAFT00845040890

Protein Domains

AMOP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005603	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030017494	UniProtKB/TrEMBL
	ENSCAFG00040005990	UniProtKB/TrEMBL
	ENSCAFG00845023174	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000009028.5	UniProtKB/TrEMBL
	ENSCAFT00000077159.2	UniProtKB/TrEMBL
	ENSCAFT00000078051.2	UniProtKB/TrEMBL
	ENSCAFT00000089040.2	UniProtKB/TrEMBL
	ENSCAFT00000103304.1	UniProtKB/TrEMBL
	ENSCAFT00030032224.1	UniProtKB/TrEMBL
	ENSCAFT00040011183.1	UniProtKB/TrEMBL
	ENSCAFT00040011203.1	UniProtKB/TrEMBL
	ENSCAFT00040011224.1	UniProtKB/TrEMBL
	ENSCAFT00845040890	ENTREZGENE
	ENSCAFT00845040890.1	UniProtKB/TrEMBL
	ENSCAFT00845040931	ENTREZGENE
	ENSCAFT00845040931.1	UniProtKB/TrEMBL
	ENSCAFT00845040972.1	UniProtKB/TrEMBL
	ENSCAFT00845041020.1	UniProtKB/TrEMBL
	ENSCAFT00845041066.1	UniProtKB/TrEMBL
Gene3D-CATH	2.20.100.10	UniProtKB/TrEMBL
InterPro	AMOP_dom	UniProtKB/TrEMBL
	TSP1_rpt	UniProtKB/TrEMBL
	TSP1_rpt_sf	UniProtKB/TrEMBL
NCBI Gene	ISM1	ENTREZGENE
PANTHER	ISTHMIN-2	UniProtKB/TrEMBL
	PTHR10239:SF30	UniProtKB/TrEMBL
Pfam	AMOP	UniProtKB/TrEMBL
	TSP_1	UniProtKB/TrEMBL
PROSITE	AMOP	UniProtKB/TrEMBL
	TSP1	UniProtKB/TrEMBL
SMART	AMOP	UniProtKB/TrEMBL
	TSP1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF82895	UniProtKB/TrEMBL
UniProt	A0A8C0Q7L4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q8B8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QCX1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PIF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PMM7_CANLF	UniProtKB/TrEMBL
	A0A8I3PRZ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S3H4_CANLF	UniProtKB/TrEMBL
	A0A8I3S6M7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SB18_CANLF	UniProtKB/TrEMBL
	A0A8P0SXN5_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:42111	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar