GOLT1B (golgi transport 1B) - Rat Genome Database

Name: GOLT1B
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: GOLT1B (golgi transport 1B) Canis lupus familiaris

Analyze

Symbol:

GOLT1B (Ensembl: SPX)

Name:

golgi transport 1B

RGD ID:

12111976

Description:

INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH dilated cardiomyopathy 1O (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endomembrane system (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

golgi transport 1 homolog B; vesicle transport protein GOT1B

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GOLT1B (golgi transport 1B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	Golt1b (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Golt1b (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Golt1b (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GOLT1B (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Golt1b (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GOLT1B (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GOLT1B (golgi transport 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	25,576,724 - 25,590,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	25,578,788 - 25,590,258 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	20,761,612 - 20,775,117 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	25,805,162 - 25,818,872 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	25,792,502 - 25,818,889 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	25,598,054 - 25,611,760 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	25,621,269 - 25,634,773 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	20,937,759 - 20,951,496 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy 1O (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

positive regulation of canonical NF-kappaB signal transduction (ISO)

retrograde transport, endosome to Golgi (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

endomembrane system (IEA)

endoplasmic reticulum (IEA)

intracellular membrane-bounded organelle (IEA)

membrane (IEA)

protein-containing complex (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

GOLT1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	25,576,724 - 25,590,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	25,578,788 - 25,590,258 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	20,761,612 - 20,775,117 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	25,805,162 - 25,818,872 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	25,792,502 - 25,818,889 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	25,598,054 - 25,611,760 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	25,621,269 - 25,634,773 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	20,937,759 - 20,951,496 (+)	NCBI		UU_Cfam_GSD_1.0

GOLT1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	21,501,789 - 21,518,408 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	21,501,781 - 21,518,408 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	21,654,723 - 21,671,342 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	21,546,067 - 21,562,357 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	21,546,066 - 21,562,357	NCBI
Celera	12	26,810,081 - 26,826,721 (+)	NCBI		Celera
Cytogenetic Map	12	p12.1	NCBI
HuRef	12	21,428,737 - 21,445,332 (+)	NCBI		HuRef
CHM1_1	12	21,620,299 - 21,636,937 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	21,380,798 - 21,397,367 (+)	NCBI		T2T-CHM13v2.0

Golt1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	142,332,929 - 142,349,584 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	142,332,947 - 142,349,584 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	142,387,211 - 142,413,835 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	142,387,221 - 142,403,858 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	142,335,763 - 142,352,378 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	142,344,465 - 142,361,080 (+)	NCBI		MGSCv36	mm8
Celera	6	145,447,191 - 145,464,316 (+)	NCBI		Celera
Cytogenetic Map	6	G2	NCBI
cM Map	6	73.98	NCBI

Golt1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	177,064,071 - 177,077,165 (+)	NCBI		GRCr8
mRatBN7.2	4	175,333,056 - 175,346,156 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	175,333,092 - 175,346,153 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	181,627,959 - 181,639,174 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	177,412,228 - 177,423,443 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	176,032,787 - 176,044,002 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	176,606,669 - 176,617,884 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	176,606,649 - 176,619,710 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	240,820,407 - 240,831,669 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	179,952,033 - 179,963,246 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	180,197,146 - 180,210,095 (+)	NCBI
Celera	4	163,865,820 - 163,876,845 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

Golt1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	17,150,261 - 17,164,093 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	17,150,261 - 17,164,108 (+)	NCBI	ChiLan1.0	ChiLan1.0

GOLT1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	75,283,989 - 75,300,374 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	75,280,387 - 75,296,776 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	64,779,889 - 64,796,264 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	67,383,798 - 67,400,189 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	67,383,798 - 67,400,189 (-)	Ensembl	panpan1.1		panPan2

Golt1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	87,412,196 - 87,421,773 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936548	5,334,192 - 5,344,677 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936548	5,337,051 - 5,345,183 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GOLT1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	51,939,485 - 51,953,315 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	51,939,480 - 51,953,314 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	55,215,653 - 55,229,469 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GOLT1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	21,367,122 - 21,383,421 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	21,367,162 - 21,383,643 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	13,761,367 - 13,777,666 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in GOLT1B
93 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	2		14		2		6		12		10	5
Low	3	5	8	6	4	6		6		8		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038438800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038641271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000019467 ⟹ ENSCAFP00000018059

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	25,579,573 - 25,590,211 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000048768 ⟹ ENSCAFP00000039588

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	25,578,788 - 25,590,258 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087254 ⟹ ENSCAFP00000062966

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	25,583,059 - 25,590,211 (-)	Ensembl

RefSeq Acc Id:

XM_038438800 ⟹ XP_038294728

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	25,805,162 - 25,818,872 (-)	NCBI

RefSeq Acc Id:

XM_038513472 ⟹ XP_038369400

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	25,598,054 - 25,611,760 (-)	NCBI

RefSeq Acc Id:

XM_038577014 ⟹ XP_038432942

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	20,937,759 - 20,951,496 (+)	NCBI

RefSeq Acc Id:

XM_038641271 ⟹ XP_038497199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	25,621,269 - 25,634,773 (-)	NCBI

RefSeq Acc Id:

XM_848223 ⟹ XP_853316

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	25,576,724 - 25,590,241 (-)	NCBI
Dog10K_Boxer_Tasha	27	20,761,612 - 20,775,117 (+)	NCBI

Sequence:

show sequence

AGCGCGGGTGGGGGGTGGCTGCGTGTTTCCGGAAGACGTGGCGGCTCTCCCCGGGGCTGTTTCC
CGGCTTCTTTCCTCCCGACTTTGCTTCACGCCCTGGACGCCCCGCGGTGCTGTGGCCGCTGCCC
TCCCTGCTGCAGCCATGATCTCCTTAACAGACACCCAGAAAATTGGAATGGGATTAACAGGATT
TGGAGTGTTTTTCCTGTTCTTTGGAATGATTCTCTTTTTTGACAAAGCACTACTGGCCATTGGA
AATGTTTTATTTGTGGCTGGTTTGGCTTTTGTCATTGGTTTAGAAAGAACATTCAGATTCTTCT
TCCAAAAACATAAAATGAAAGCTACAGGATTTTTCCTGGGTGGAGTATTTGTAGTCCTTATTGG
TTGGCCTTTGATAGGCATGATCTTTGAAATTTATGGATTTTTTCTCTTGTTCAGGGGCTTCTTT
CCTGTGGTCATTGGCTTTATTAGAAGAGTGCCAGTCCTTGGATCCCTCTTGAATTTACCTGGAA
TTAGATCATTTGTAGATAAAGTTGGAGAAAGCAACAATATGGTATAACAACGAATGAATTGAAG
ACTCATTTAAAATATTGTATTATTTATAAAATACTTTGAAGAATATTCAGCACAAAATTAAATT
ACATGAAATAGCTTGTAATGTTCTTTACAGAAGTTTAAAACGTATAGTCTACAAAGTACCAATA
GCAGTTAATAAAGAGGCAATGAGATCAGGCTTCTAATCAAGTGATCTAAGAAGTCAGCAAGCAA
ACTAAAGGAGGTGAATCTATGTTACAATACTTATTGAAACTCTTGAAGGCAATTTTTATTGTTT
ATCCACAATGTGTGAAACAGCCATCCTTGGAGAACTCTGCTGCCTGTTTCTTTTCTTCTTATAT
TGGAGGTGCGGGAGCACTGTAGGCATTTGCTTTTTAGAAATATCCACTGGAATGGTAAAAGTAT
TTCCAGTTGCGCTGTGTCTCTGAAAGTGATGCATGAGTTAGATTGGATTATGTCATTTTAATGT
ATTAAAACCAAGGAAAACCCAGTTTTGATGTATGAATCACTTTTTTTTTTTTTGTAAATGTATG
GTAAAAATAAAACATTTGTGGTTCTTCTGATTCTTAATATTTTAAAGCCAGATGAAAATCTGAA
CTAGATATTCACTGTCAGAATACGCAGAGGTCATTCTTTATAACTAAACACTCCGGAACTACTT
CTACTTCCTGAGAGTCTGACCTAATTATCTGTATCCTTCGTTACATGTAAGCATCTAACAAAAA
CCATGAAGTAGTCTGTTACGTGCCTTGTTTCATTGGATAGTCTTTTCTTTAAGATACCAAACGA
TGCAAACCAAATGGATTTTTCTGTCATGGTGTAGTTTTTCTTTCTTTTTTGTTTTATTGTTTTT
ATTTTAGTAGTGATGTTATCATTTTACTTTTCATAAATTAAATAACTATTGATAATGTTTACTT
TAAGATGTAATATGTTAAAAGGTTAAACTTATATTTGGTAAGAGCTTTTCATGTAAAGTGGAGT
TTCCCTTTATTTTTAGCTTTTTCCTAACAAAAATCAATATGCATGTTGAATGCTTCATAAGATC
ACTCTTCATCTTGAATTCATGGAGAAAATATCTGAATTTCACATGCTAAAGTTAGTTTATTATA
ATTAAATGGGCTATAGTTTCTTAAAAATATGACACTAAAAAAATGTGTTGTTTTTTTCTACCAT
TGATGCTTGACTGACAGTGGCCATTTTTTCATTAGTAGTTTTCCGACCTGGCAGCTTTTCTGGT
AGATCTAAGAACACATTTCAACAGCCATAGTACTATTTGTTTTACCACTAATGATTGCACTTTT
ACTTTTTTAACAGTTGCAAAGCTTTTTAATGCACAAAATCATAACTGAAATTTGTGATTTTTAT
TTACAAACATGTCTACAAAATATATCACAGCTTATGTTATTTTAGTTAAATCTCGATGCACAGA
AAACTCCCATCCTTGCTTGTCTAAAGAAGGAAAGACTTGGTATATAGTTTAATGGTTCAGTCTT
GTGGATTACTGTCTTTTGGTACTGGCATTTGACTTATGACATAATCTGTGAAACTAGATGATAT
TGACAAAATGAGACTCCTACCTCAATAGTTCATGGAATAATAAGAGACCTAGTGTTGTGTCTAA
TGTTCTTCAAAAAAGTAATATCCTCATTTGGAGAGTGTCAAATATATACATATTTTGGGGATCG
ACTTATACAAGTTGCCCTGTAGGACTCTTATACATATTTTTGACTGATCCATATTATTTTCAGT
GGCTAGATAATTCTATCTTTTTAGAACAAGAACAATATCTGCTAATGTAAGGAACATCTGTATT
ATTTAACTCCTTTGTAGACATGAATTTCTATCAAAATGTTCTTTGCACTGTAACAGATCTCTTT
TTCAAAATCTTACTTCAGAAGTATTATTAGAAGTTGGTGTGAAGGATTTGATAATCTCCCAGTC
CTTAGTAAGATTGAGAGGCTGGAGCAGTTTTCAAAGAGTCCACAAGTTAATTTCAAATGTGAGT
TGGGGACTGCTTGGCAGCATTGTATATTTCTTACTCAGAACCACTGATGAGGCTCTATTTTTAA
ACATATTAGTCTTCTGACAGAAAGCACTGTACATTATATTGTTTCTTCCTTTCCAAAATTAGCC
TTCTCTCTTTGTGACAAAAATGTACTTTGATTATTGCTATAAAGATGGAAGAAAAGGTCTAATA
CTACTTAGCCTTAAGTGTACCTGGCGTTGTTCAAATGTATTTTCTGTAACAGAAACATACTTGC
AATGTTTTTCATTTCCCCTTATAAATTGTAATTCCTGAAATATTGCTGCTTCAAAAAGTCTCAC
AGTCAGAGTATATGACCTAACAATTGAATATTGTAAATACACTTGTCTTACCTCTCAATAAAAG
GGTACTTTTCTATTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038294728	(Get FASTA)	NCBI Sequence Viewer
	XP_038369400	(Get FASTA)	NCBI Sequence Viewer
	XP_038432942	(Get FASTA)	NCBI Sequence Viewer
	XP_038497199	(Get FASTA)	NCBI Sequence Viewer
	XP_853316	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000018059.5
	ENSCAFP00000039588.2
	ENSCAFP00000062966.1
	ENSCAFP00030037203.1
	ENSCAFP00030037229.1
	ENSCAFP00030037259.1
	ENSCAFP00040040369.1
	ENSCAFP00040040408.1
	ENSCAFP00845020902.1
	ENSCAFP00845020921.1
	ENSCAFP00845020940.1
	ENSCAFP00845020955.1

RefSeq Acc Id:	XP_853316 ⟸ XM_848223
- UniProtKB:	A0A8C0K4C2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHK MKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVIGFIRRVPVLGSLLNLPGIRSFV DKVGESNNMV hide sequence

RefSeq Acc Id:

ENSCAFP00000062966 ⟸ ENSCAFT00000087254

RefSeq Acc Id:

ENSCAFP00000039588 ⟸ ENSCAFT00000048768

RefSeq Acc Id:

ENSCAFP00000018059 ⟸ ENSCAFT00000019467

RefSeq Acc Id:

XP_038369400 ⟸ XM_038513472

RefSeq Acc Id:

XP_038497199 ⟸ XM_038641271

RefSeq Acc Id:	XP_038294728 ⟸ XM_038438800
- UniProtKB:	A0A8C0K4C2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038432942 ⟸ XM_038577014
- UniProtKB:	A0A8C0K4C2 (UniProtKB/TrEMBL)

Promoters

RGD ID:

13688168

Promoter ID:

EPDNEW_C6235

Type:

initiation region

Name:

GOLT1B_1

Description:

golgi transport 1B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	25,590,208 - 25,590,268	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000012256	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030023184	UniProtKB/TrEMBL
	ENSCAFG00040024805	UniProtKB/TrEMBL
	ENSCAFG00845014813	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000019467.5	UniProtKB/TrEMBL
	ENSCAFT00000048768.4	UniProtKB/TrEMBL
	ENSCAFT00000087254.2	UniProtKB/TrEMBL
	ENSCAFT00030042644.1	UniProtKB/TrEMBL
	ENSCAFT00030042673.1	UniProtKB/TrEMBL
	ENSCAFT00030042707.1	UniProtKB/TrEMBL
	ENSCAFT00040046257.1	UniProtKB/TrEMBL
	ENSCAFT00040046301.1	UniProtKB/TrEMBL
	ENSCAFT00845026519.1	UniProtKB/TrEMBL
	ENSCAFT00845026539.1	UniProtKB/TrEMBL
	ENSCAFT00845026561.1	UniProtKB/TrEMBL
	ENSCAFT00845026587.1	UniProtKB/TrEMBL
InterPro	Got1	UniProtKB/TrEMBL
	Vesicle_transpt_Got1/SFT2	UniProtKB/TrEMBL
NCBI Gene	GOLT1B	ENTREZGENE
PANTHER	PTHR21493	UniProtKB/TrEMBL
	VESICLE TRANSPORT PROTEIN GOT1B	UniProtKB/TrEMBL
Pfam	Got1	UniProtKB/TrEMBL
UniProt	A0A8C0K4C2	ENTREZGENE
	A0A8C0P6X3_CANLF	UniProtKB/TrEMBL
	A0A8C0PBQ3_CANLF	UniProtKB/TrEMBL
	A0A8C0TRY2_CANLF	UniProtKB/TrEMBL
	A0A8I3NS57_CANLF	UniProtKB/TrEMBL
	A0A8I3NVT2_CANLF	UniProtKB/TrEMBL
	A0A8I3NZB0_CANLF	UniProtKB/TrEMBL
	A0A8I3S148_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:41348	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar