FANCC (FA complementation group C) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: FANCC (FA complementation group C) Canis lupus familiaris
Analyze
Symbol: FANCC
Name: FA complementation group C
RGD ID: 12111111
Description: INVOLVED IN brain morphogenesis (ortholog); cellular response to oxidative stress (ortholog); gamete generation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); aspirin-induced respiratory disease (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fanconi anemia complementation group C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1171,388,931 - 71,678,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl171,487,601 - 71,678,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,151,677 - 72,440,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0171,693,614 - 71,983,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl171,788,781 - 71,973,067 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1171,505,368 - 71,794,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0171,269,071 - 71,558,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0171,975,513 - 72,265,108 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FANCC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1171,388,931 - 71,678,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl171,487,601 - 71,678,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,151,677 - 72,440,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0171,693,614 - 71,983,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl171,788,781 - 71,973,067 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1171,505,368 - 71,794,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0171,269,071 - 71,558,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0171,975,513 - 72,265,108 (+)NCBIUU_Cfam_GSD_1.0
FANCC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38995,099,054 - 95,317,709 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl995,099,054 - 95,426,796 (-)EnsemblGRCh38hg38GRCh38
GRCh37997,861,336 - 98,079,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,901,157 - 97,119,812 (-)NCBINCBI36Build 36hg18NCBI36
Build 34994,940,890 - 95,159,546NCBI
Celera968,302,367 - 68,521,048 (-)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef967,470,857 - 67,689,280 (-)NCBIHuRef
CHM1_1998,007,791 - 98,226,463 (-)NCBICHM1_1
T2T-CHM13v2.09107,268,451 - 107,487,223 (-)NCBIT2T-CHM13v2.0
Fancc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,452,519 - 63,645,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1363,432,857 - 63,645,092 (-)EnsemblGRCm39 Ensembl
GRCm381363,301,334 - 63,497,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,285,043 - 63,497,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv371363,406,017 - 63,533,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361363,320,977 - 63,440,947 (-)NCBIMGSCv36mm8
Celera1364,958,890 - 65,084,928 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1332.8NCBI
Fancc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8171,686,374 - 1,818,672 (+)NCBIGRCr8
mRatBN7.2171,680,660 - 1,822,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl171,681,324 - 1,829,376 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,700,069 - 1,822,177 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0173,242,667 - 3,364,775 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0171,697,517 - 1,819,627 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.017826,512 - 955,703 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17833,509 - 955,615 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.017819,325 - 948,712 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,254,528 - 7,341,500 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,254,527 - 7,341,497 (+)NCBI
Celera17719,268 - 841,089 (-)NCBICelera
RH 3.4 Map175.6RGD
Cytogenetic Map17p14NCBI
Fancc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542222,032,258 - 22,247,044 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542222,031,825 - 22,246,478 (-)NCBIChiLan1.0ChiLan1.0
FANCC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21144,131,166 - 44,349,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1944,133,582 - 44,352,031 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0966,201,581 - 66,418,229 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1994,327,355 - 94,544,772 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl994,329,971 - 94,477,198 (-)Ensemblpanpan1.1panPan2
Fancc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049444,751,995 - 4,931,679 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366263,982,647 - 4,159,976 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366263,980,311 - 4,147,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1026,796,572 - 27,061,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11026,796,546 - 27,055,271 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21031,282,173 - 31,315,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112107,780,087 - 107,991,828 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12107,845,135 - 107,991,237 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603896,155,447 - 96,377,196 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fancc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475316,566,864 - 16,811,438 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FANCC
2682 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 15 6 6 9 8 10 4
Below cutoff 5 7 6 6 6 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022420404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038466201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038591199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000001991   ⟹   ENSCAFP00000001839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl171,487,601 - 71,671,215 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000036406   ⟹   ENSCAFP00000031780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl171,487,601 - 71,669,440 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063240   ⟹   ENSCAFP00000043959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl171,487,601 - 71,678,506 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000067091   ⟹   ENSCAFP00000058088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl171,487,601 - 71,669,440 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089930   ⟹   ENSCAFP00000056415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl171,487,601 - 71,495,369 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008806   ⟹   ENSCAFP00845006942
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl171,788,781 - 71,973,067 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008813   ⟹   ENSCAFP00845006949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl171,788,781 - 71,972,059 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008822   ⟹   ENSCAFP00845006956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl171,788,781 - 71,972,059 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008832   ⟹   ENSCAFP00845006964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl171,788,781 - 71,968,229 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845008837   ⟹   ENSCAFP00845006966
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl171,788,781 - 71,799,953 (+)Ensembl
RefSeq Acc Id: XM_022420404   ⟹   XP_022276112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1171,388,932 - 71,669,428 (+)NCBI
Dog10K_Boxer_Tasha172,151,682 - 72,431,461 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420405   ⟹   XP_022276113
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1171,388,932 - 71,669,428 (+)NCBI
Dog10K_Boxer_Tasha172,151,682 - 72,431,461 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038466194   ⟹   XP_038322122
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,370 - 71,794,755 (+)NCBI
RefSeq Acc Id: XM_038466195   ⟹   XP_038322123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,370 - 71,794,755 (+)NCBI
RefSeq Acc Id: XM_038466196   ⟹   XP_038322124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,370 - 71,794,755 (+)NCBI
RefSeq Acc Id: XM_038466197   ⟹   XP_038322125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,986 - 71,794,755 (+)NCBI
RefSeq Acc Id: XM_038466198   ⟹   XP_038322126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,969 - 71,794,755 (+)NCBI
RefSeq Acc Id: XM_038466199   ⟹   XP_038322127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,368 - 71,794,755 (+)NCBI
RefSeq Acc Id: XM_038466200   ⟹   XP_038322128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,373 - 71,785,293 (+)NCBI
RefSeq Acc Id: XM_038466201   ⟹   XP_038322129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1171,505,373 - 71,785,293 (+)NCBI
RefSeq Acc Id: XM_038526892   ⟹   XP_038382820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,975,515 - 72,265,108 (+)NCBI
RefSeq Acc Id: XM_038526893   ⟹   XP_038382821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,975,515 - 72,265,108 (+)NCBI
RefSeq Acc Id: XM_038526894   ⟹   XP_038382822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,975,515 - 72,265,108 (+)NCBI
RefSeq Acc Id: XM_038526895   ⟹   XP_038382823
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,976,132 - 72,265,108 (+)NCBI
RefSeq Acc Id: XM_038526896   ⟹   XP_038382824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,976,115 - 72,265,108 (+)NCBI
RefSeq Acc Id: XM_038526897   ⟹   XP_038382825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,975,513 - 72,265,108 (+)NCBI
RefSeq Acc Id: XM_038526898   ⟹   XP_038382826
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,975,518 - 72,255,600 (+)NCBI
RefSeq Acc Id: XM_038526899   ⟹   XP_038382827
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0171,975,518 - 72,255,600 (+)NCBI
RefSeq Acc Id: XM_038566081   ⟹   XP_038422009
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha172,151,679 - 72,440,952 (+)NCBI
RefSeq Acc Id: XM_038566160   ⟹   XP_038422088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha172,151,679 - 72,440,952 (+)NCBI
RefSeq Acc Id: XM_038566244   ⟹   XP_038422172
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha172,151,679 - 72,440,952 (+)NCBI
RefSeq Acc Id: XM_038566325   ⟹   XP_038422253
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha172,152,278 - 72,440,952 (+)NCBI
RefSeq Acc Id: XM_038566399   ⟹   XP_038422327
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha172,151,677 - 72,440,952 (+)NCBI
RefSeq Acc Id: XM_038591192   ⟹   XP_038447120
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,073 - 71,558,824 (+)NCBI
RefSeq Acc Id: XM_038591193   ⟹   XP_038447121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,073 - 71,558,824 (+)NCBI
RefSeq Acc Id: XM_038591194   ⟹   XP_038447122
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,073 - 71,558,824 (+)NCBI
RefSeq Acc Id: XM_038591195   ⟹   XP_038447123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,687 - 71,558,824 (+)NCBI
RefSeq Acc Id: XM_038591196   ⟹   XP_038447124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,671 - 71,558,824 (+)NCBI
RefSeq Acc Id: XM_038591197   ⟹   XP_038447125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,071 - 71,558,824 (+)NCBI
RefSeq Acc Id: XM_038591198   ⟹   XP_038447126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,075 - 71,549,161 (+)NCBI
RefSeq Acc Id: XM_038591199   ⟹   XP_038447127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0171,269,075 - 71,549,161 (+)NCBI
RefSeq Acc Id: XM_038654991   ⟹   XP_038510919
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,693,616 - 71,983,350 (+)NCBI
RefSeq Acc Id: XM_038654992   ⟹   XP_038510920
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,693,616 - 71,983,350 (+)NCBI
RefSeq Acc Id: XM_038654993   ⟹   XP_038510921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,693,616 - 71,983,350 (+)NCBI
RefSeq Acc Id: XM_038654994   ⟹   XP_038510922
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,694,215 - 71,983,350 (+)NCBI
RefSeq Acc Id: XM_038654995   ⟹   XP_038510923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,693,614 - 71,983,350 (+)NCBI
RefSeq Acc Id: XM_038654996   ⟹   XP_038510924
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,693,619 - 71,973,842 (+)NCBI
RefSeq Acc Id: XM_038654997   ⟹   XP_038510925
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0171,693,619 - 71,973,842 (+)NCBI
Protein Sequences
Protein RefSeqs XP_022276112 (Get FASTA)   NCBI Sequence Viewer  
  XP_022276113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322123 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038322129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382820 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382822 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382823 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382824 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382825 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382826 (Get FASTA)   NCBI Sequence Viewer  
  XP_038382827 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422009 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422088 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422172 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422253 (Get FASTA)   NCBI Sequence Viewer  
  XP_038422327 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447120 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447121 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447123 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038447127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510919 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510920 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510921 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510923 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038510925 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000001839.5
  ENSCAFP00000043959.2
  ENSCAFP00000058088.1
  ENSCAFP00000069711.1
  ENSCAFP00030011344.1
  ENSCAFP00030011425.1
  ENSCAFP00030011535.1
  ENSCAFP00040008619.1
  ENSCAFP00845006942
  ENSCAFP00845006942.1
  ENSCAFP00845006949.1
  ENSCAFP00845006956.1
  ENSCAFP00845006964.1
  ENSCAFP00845006966.1
RefSeq Acc Id: XP_022276112   ⟸   XM_022420404
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LB89 (UniProtKB/TrEMBL),   A0A8I3MPJ6 (UniProtKB/TrEMBL),   A0A8I3RSD0 (UniProtKB/TrEMBL),   A0A8P0SX94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022276113   ⟸   XM_022420405
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LB89 (UniProtKB/TrEMBL),   A0A8I3MPJ6 (UniProtKB/TrEMBL),   A0A8I3RSD0 (UniProtKB/TrEMBL),   A0A8P0SX94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000001839   ⟸   ENSCAFT00000001991
RefSeq Acc Id: ENSCAFP00000043959   ⟸   ENSCAFT00000063240
RefSeq Acc Id: ENSCAFP00000058088   ⟸   ENSCAFT00000067091
RefSeq Acc Id: ENSCAFP00000056415   ⟸   ENSCAFT00000089930
RefSeq Acc Id: ENSCAFP00000031780   ⟸   ENSCAFT00000036406
RefSeq Acc Id: XP_038322127   ⟸   XM_038466199
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038322123   ⟸   XM_038466195
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322124   ⟸   XM_038466196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322122   ⟸   XM_038466194
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322128   ⟸   XM_038466200
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038322129   ⟸   XM_038466201
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038322126   ⟸   XM_038466198
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038322125   ⟸   XM_038466197
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447125   ⟸   XM_038591197
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038447121   ⟸   XM_038591193
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447122   ⟸   XM_038591194
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447120   ⟸   XM_038591192
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447126   ⟸   XM_038591198
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038447127   ⟸   XM_038591199
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038447124   ⟸   XM_038591196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038447123   ⟸   XM_038591195
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038510923   ⟸   XM_038654995
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038510920   ⟸   XM_038654992
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510921   ⟸   XM_038654993
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510919   ⟸   XM_038654991
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510924   ⟸   XM_038654996
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LB89 (UniProtKB/TrEMBL),   A0A8I3MPJ6 (UniProtKB/TrEMBL),   A0A8I3RSD0 (UniProtKB/TrEMBL),   A0A8P0SX94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510925   ⟸   XM_038654997
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LB89 (UniProtKB/TrEMBL),   A0A8I3MPJ6 (UniProtKB/TrEMBL),   A0A8I3RSD0 (UniProtKB/TrEMBL),   A0A8P0SX94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510922   ⟸   XM_038654994
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422327   ⟸   XM_038566399
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038422088   ⟸   XM_038566160
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422172   ⟸   XM_038566244
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422009   ⟸   XM_038566081
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422253   ⟸   XM_038566325
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382825   ⟸   XM_038526897
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038382821   ⟸   XM_038526893
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382822   ⟸   XM_038526894
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382820   ⟸   XM_038526892
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382826   ⟸   XM_038526898
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LB89 (UniProtKB/TrEMBL),   A0A8C0MM36 (UniProtKB/TrEMBL),   A0A8I3MPJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382827   ⟸   XM_038526899
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LB89 (UniProtKB/TrEMBL),   A0A8C0MM36 (UniProtKB/TrEMBL),   A0A8I3MPJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382824   ⟸   XM_038526896
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382823   ⟸   XM_038526895
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MKN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845006949   ⟸   ENSCAFT00845008813
RefSeq Acc Id: ENSCAFP00845006942   ⟸   ENSCAFT00845008806
RefSeq Acc Id: ENSCAFP00845006956   ⟸   ENSCAFT00845008822
RefSeq Acc Id: ENSCAFP00845006966   ⟸   ENSCAFT00845008837
RefSeq Acc Id: ENSCAFP00845006964   ⟸   ENSCAFT00845008832

Promoters
RGD ID:13682058
Promoter ID:EPDNEW_C126
Type:single initiation site
Name:FANCC_1
Description:Fanconi anemia complementation group C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1171,388,950 - 71,389,010EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001286 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007061 UniProtKB/TrEMBL
  ENSCAFG00040005300 UniProtKB/TrEMBL
  ENSCAFG00845004921 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001991.5 UniProtKB/TrEMBL
  ENSCAFT00000063240.2 UniProtKB/TrEMBL
  ENSCAFT00000067091.2 UniProtKB/TrEMBL
  ENSCAFT00000098055.1 UniProtKB/TrEMBL
  ENSCAFT00030012979.1 UniProtKB/TrEMBL
  ENSCAFT00030013067.1 UniProtKB/TrEMBL
  ENSCAFT00030013194.1 UniProtKB/TrEMBL
  ENSCAFT00040009937.1 UniProtKB/TrEMBL
  ENSCAFT00845008806 ENTREZGENE
  ENSCAFT00845008806.1 UniProtKB/TrEMBL
  ENSCAFT00845008813.1 UniProtKB/TrEMBL
  ENSCAFT00845008822.1 UniProtKB/TrEMBL
  ENSCAFT00845008832.1 UniProtKB/TrEMBL
  ENSCAFT00845008837.1 UniProtKB/TrEMBL
InterPro FANCC UniProtKB/TrEMBL
NCBI Gene FANCC ENTREZGENE
PANTHER FANCONI ANEMIA GROUP C PROTEIN UniProtKB/TrEMBL
  PTHR16798 UniProtKB/TrEMBL
Pfam Fanconi_C UniProtKB/TrEMBL
PIRSF FACC_protein UniProtKB/TrEMBL
PRINTS FANCONICGENE UniProtKB/TrEMBL
UniProt A0A8C0LB89 ENTREZGENE
  A0A8C0MKN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MM36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0REN3_CANLF UniProtKB/TrEMBL
  A0A8I3MMP1_CANLF UniProtKB/TrEMBL
  A0A8I3MPJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MY62_CANLF UniProtKB/TrEMBL
  A0A8I3RSD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RSD4_CANLF UniProtKB/TrEMBL
  A0A8P0N4G2_CANLF UniProtKB/TrEMBL
  A0A8P0PJL3_CANLF UniProtKB/TrEMBL
  A0A8P0SX94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TA17_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40718 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 FANCC  FA complementation group C    Fanconi anemia complementation group C  Symbol and/or name change 5135510 APPROVED