RPS3 (ribosomal protein S3) - Rat Genome Database

Name: RPS3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: RPS3 (ribosomal protein S3) Canis lupus familiaris

Analyze

Symbol:

RPS3

Name:

ribosomal protein S3

RGD ID:

12109135

Description:

ENCODES a protein that exhibits damaged DNA binding (ortholog); DNA endonuclease activity (ortholog); DNA N-glycosylase activity (ortholog); INVOLVED IN base-excision repair (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Chromosomal Instability (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosol (ortholog); cytosolic ribosome (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

40S ribosomal protein S3; small ribosomal subunit protein uS3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPS3 (ribosomal protein S3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPS3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rps3 (ribosomal protein S3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	23,180,515 - 23,187,034 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	23,180,515 - 23,187,034 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	22,946,186 - 22,952,704 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	23,383,445 - 23,389,963 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	23,383,445 - 23,389,963 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	23,181,778 - 23,188,296 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	23,378,071 - 23,384,591 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	23,295,999 - 23,302,524 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-methylglutaconic aciduria type 7b (ISO)

Chromosomal Instability (ISO)

genetic disease (ISO)

intellectual disability (ISO)

melanoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

base-excision repair (ISO)

cell division (IEA)

cellular response to hydrogen peroxide (ISO)

cellular response to nerve growth factor stimulus (ISO)

cellular response to reactive oxygen species (ISO)

cellular response to tumor necrosis factor (ISO)

chromosome segregation (ISO)

DNA damage response (ISO)

DNA repair (IEA)

negative regulation of DNA repair (ISO)

negative regulation of protein ubiquitination (ISO)

negative regulation of translation (ISO)

positive regulation of activated T cell proliferation (ISO)

positive regulation of apoptotic signaling pathway (IBA,IEA)

positive regulation of base-excision repair (ISO)

positive regulation of DNA repair (ISO)

positive regulation of gene expression (ISO)

positive regulation of interleukin-2 production (ISO)

positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage (ISO)

positive regulation of microtubule polymerization (ISO)

positive regulation of non-canonical NF-kappaB signal transduction (ISO)

positive regulation of protein-containing complex assembly (ISO)

positive regulation of T cell receptor signaling pathway (ISO)

regulation of apoptotic process (ISO)

regulation of translation (IEA)

response to TNF agonist (ISO)

spindle assembly (ISO)

translation (IEA)

Cellular Component

cytoplasm (IEA)

cytoplasmic side of rough endoplasmic reticulum membrane (ISO)

cytoskeleton (IEA)

cytosol (ISO)

cytosolic ribosome (ISO)

cytosolic small ribosomal subunit (IBA,IEA,ISO)

dendrite (ISO)

endoplasmic reticulum (ISO)

mitochondrial inner membrane (IEA)

mitochondrial matrix (ISO)

mitochondrion (IEA)

mitotic spindle (ISO)

NF-kappaB complex (ISO)

nucleolus (IEA)

nucleus (IBA,IEA)

plasma membrane (ISO)

postsynaptic density (ISO)

ribonucleoprotein complex (IEA)

ribosome (IEA)

ruffle membrane (ISO)

small ribosomal subunit (IEA)

spindle (IEA)

synapse (ISO)

Molecular Function

class I DNA-(apurinic or apyrimidinic site) endonuclease activity (IEA)

damaged DNA binding (ISO)

DNA binding (IEA)

DNA endonuclease activity (ISO)

DNA N-glycosylase activity (ISO)

DNA-(apurinic or apyrimidinic site) endonuclease activity (ISO)

DNA-binding transcription factor binding (ISO)

enzyme binding (ISO)

Hsp70 protein binding (ISO)

Hsp90 protein binding (ISO)

kinase binding (ISO)

lyase activity (IEA)

microtubule binding (ISO)

mRNA binding (ISO)

oxidized purine DNA binding (ISO)

oxidized pyrimidine DNA binding (ISO)

protein binding (ISO)

protein kinase A binding (ISO)

protein kinase binding (ISO)

protein-containing complex binding (ISO)

RNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

small ribosomal subunit rRNA binding (ISO)

structural constituent of ribosome (IBA,IEA)

supercoiled DNA binding (ISO)

tubulin binding (ISO)

ubiquitin-like protein conjugating enzyme binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

Additional References at PubMed

PMID:16341006	PMID:18400176	PMID:22301074	PMID:30032202	PMID:37756605

Genomics

Comparative Map Data

RPS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	23,180,515 - 23,187,034 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	23,180,515 - 23,187,034 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	22,946,186 - 22,952,704 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	23,383,445 - 23,389,963 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	23,383,445 - 23,389,963 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	23,181,778 - 23,188,296 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	23,378,071 - 23,384,591 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	23,295,999 - 23,302,524 (-)	NCBI		UU_Cfam_GSD_1.0

RPS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	75,399,518 - 75,422,302 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	75,399,515 - 75,422,280 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	75,110,562 - 75,133,346 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	74,788,210 - 74,794,381 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	74,788,221 - 74,794,380	NCBI
Celera	11	72,418,313 - 72,424,484 (+)	NCBI		Celera
Cytogenetic Map	11	q13.4	NCBI
HuRef	11	71,407,971 - 71,430,530 (+)	NCBI		HuRef
CHM1_1	11	74,994,110 - 75,016,921 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	75,329,106 - 75,351,811 (+)	NCBI		T2T-CHM13v2.0

Rps3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	99,127,103 - 99,132,916 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	99,127,103 - 99,132,945 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	99,477,896 - 99,483,709 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	99,477,896 - 99,483,738 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	106,626,406 - 106,632,219 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	99,346,578 - 99,357,709 (-)	NCBI		MGSCv36	mm8
Celera	7	99,802,893 - 99,808,694 (-)	NCBI		Celera
Cytogenetic Map	7	E1	NCBI
cM Map	7	54.07	NCBI

Rps3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	163,190,476 - 163,195,885 (-)	NCBI		GRCr8
mRatBN7.2	1	153,778,363 - 153,783,663 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	153,777,472 - 153,783,680 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	161,774,286 - 161,779,586 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	168,954,438 - 168,959,738 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	161,827,972 - 161,833,272 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	164,435,868 - 164,441,167 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	164,435,878 - 164,441,167 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	170,637,728 - 170,643,027 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	156,811,470 - 156,816,770 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	156,889,883 - 156,895,183 (-)	NCBI
Celera	1	151,861,094 - 151,866,394 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

Rps3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	16,436,899 - 16,443,073 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	16,436,899 - 16,442,325 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	76,331,396 - 76,337,606 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	77,374,084 - 77,380,294 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	70,460,702 - 70,466,909 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	73,762,794 - 73,768,982 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	73,762,794 - 73,768,982 (+)	Ensembl	panpan1.1		panPan2

Rps3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	62,598,517 - 62,604,928 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	4,198,130 - 4,204,528 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	4,198,189 - 4,204,531 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	9,624,990 - 9,630,401 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	9,612,939 - 9,630,404 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	10,814,836 - 10,818,618 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	66,629,895 - 66,636,462 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	66,629,954 - 66,635,344 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	59,169,727 - 59,176,327 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rps3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624817	1,710,768 - 1,716,224 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624817	1,710,768 - 1,715,923 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RPS3
113 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High	4		12		5		6		2		10	4
Medium	1	5	10	6	1	6		6	10	8		2
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001313777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000008686 ⟹ ENSCAFP00000008052

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	21	23,180,515 - 23,187,034 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845021062 ⟹ ENSCAFP00845016559

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	21	23,383,445 - 23,389,963 (-)	Ensembl

RefSeq Acc Id:

NM_001313777 ⟹ NP_001300706

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	21	23,180,515 - 23,187,034 (-)	NCBI
Dog10K_Boxer_Tasha	21	22,946,186 - 22,952,704 (-)	NCBI
ROS_Cfam_1.0	21	23,383,445 - 23,389,963 (-)	NCBI
UMICH_Zoey_3.1	21	23,181,778 - 23,188,296 (-)	NCBI
UNSW_CanFamBas_1.0	21	23,378,071 - 23,384,591 (-)	NCBI
UU_Cfam_GSD_1.0	21	23,295,999 - 23,302,524 (-)	NCBI

Sequence:

show sequence

ACTTCCTTTTCTTTCCGGGGCGCGCGGCGGCAAGATGGCGGTGCAAATTTCCAAGAAGAGGAAG
TTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATGAGTTTCTCACTCGGGAGCTCGCTGAAG
ATGGCTACTCTGGGGTTGAGGTCCGAGTTACACCAACCAGGACAGAAATCATTATCCTGGCCAC
CAGGACACAGAATGTTCTTGGTGAAAAGGGCCGGAGGATCCGGGAATTGACTGCTGTGGTTCAG
AAGAGGTTTGGTTTTCCTGAGGGCAGTGTAGAGCTCTATGCCGAAAAGGTGGCCACAAGAGGTC
TATGTGCTATTGCCCAGGCAGAGTCACTGCGTTACAAACTCCTAGGAGGCCTTGCTGTGCGGAG
GGCCTGCTATGGTGTGCTGCGGTTCATCATGGAGAGTGGGGCCAAAGGCTGTGAGGTCGTGGTG
TCTGGGAAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCTTGATGATTCACA
GTGGAGACCCTGTTAACTACTACGTTGACACCGCTGTGCGCCATGTGCTGCTCAGACAGGGTGT
GCTGGGCATCAAAGTCAAGATCATGCTTCCCTGGGACCCTAGTGGTAAGATTGGCCCTAAGAAG
CCCCTGCCAGATCATGTGAGCATTGTGGAACCCAAGGATGAGATACTGCCCACCACCCCCATCT
CGGAACAGAAGGGTGGGAAGCCAGAGCCGCCTGCTATGCCGCAGCCAGTACCCACAGCATAAAT
AGGGTCTCCTTGGCAGTTGGATCTGGAGGCTGGATTTTACTCTGTGAAGACCTTTAATAAAATA
TTTGAGTAAAACACGTGGCACAAATAGACTGTCCACTATTTGGTCTGAGAATTCTATTGCCTGA
AGGGAACATTAACTTGGTTGGCTGCCGGCCTCATTTTCCCTGAAATCCTTGGTTTCAGCTGTTG
TTGTGAGGCAAGAGCCAGAACAGGAAGACCCAAACAGCTAACCAGAGTAATATCCTATAAATCT
GTGTAAAGTGAAGGCTGATTGCTAGTTGGATAGCACCTTGATTAATTCACCCACAGTTTGAGGT
TATAGGTTTGGAAGAGGGATATATTTAAGATGTTTTTCTTTTCTAATGCATAAAGAAATCTTAT
TGCACATAGAAAATAAATACGGTGCCTATTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001300706	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	E2RH47	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000008052.3
	ENSCAFP00030029066.1
	ENSCAFP00030029127.1
	ENSCAFP00040027712.1
	ENSCAFP00805040264
	ENSCAFP00845016559
	ENSCAFP00845016559.1

RefSeq Acc Id:

NP_001300706 ⟸ NM_001313777

- UniProtKB:

E2RH47 (UniProtKB/Swiss-Prot), A0A8C0JLD4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGR
RIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME
SGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPW
DPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA

hide sequence

RefSeq Acc Id:

ENSCAFP00000008052 ⟸ ENSCAFT00000008686

RefSeq Acc Id:

ENSCAFP00845016559 ⟸ ENSCAFT00845021062

Protein Domains

KH type-2

Promoters

RGD ID:

13687188

Promoter ID:

EPDNEW_C5257

Type:

multiple initiation site

Name:

RPS3_1

Description:

ribosomal protein S3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	21	23,187,029 - 23,187,089	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005402	Ensembl, UniProtKB/Swiss-Prot
	ENSCAFG00030018057	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00040017211	UniProtKB/Swiss-Prot
	ENSCAFG00805028364	UniProtKB/Swiss-Prot
	ENSCAFG00845011844	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSCAFT00000008686.5	UniProtKB/Swiss-Prot
	ENSCAFT00030033312.1	UniProtKB/TrEMBL
	ENSCAFT00030033380.1	UniProtKB/Swiss-Prot
	ENSCAFT00040031863.1	UniProtKB/Swiss-Prot
	ENSCAFT00805051405	UniProtKB/Swiss-Prot
	ENSCAFT00845021062	ENTREZGENE
	ENSCAFT00845021062.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.1140.32	UniProtKB/Swiss-Prot
	3.30.300.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	KH_dom-like_a/b	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH_dom_type_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH_sf_prok-type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S3_C	UniProtKB/Swiss-Prot
	Ribosomal_S3_C_sf	UniProtKB/Swiss-Prot
	Ribosomal_S3_CS	UniProtKB/Swiss-Prot
	Ribosomal_S3_euk/arc	UniProtKB/Swiss-Prot
KEGG Report	cfa:476804	UniProtKB/Swiss-Prot
NCBI Gene	RPS3	ENTREZGENE
PANTHER	30S/40S RIBOSOMAL PROTEIN S3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	40S RIBOSOMAL PROTEIN S3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	KH_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S3_C	UniProtKB/Swiss-Prot
PROSITE	KH_TYPE_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RIBOSOMAL_S3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54814	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF54821	UniProtKB/Swiss-Prot
UniProt	A0A8C0JLD4	ENTREZGENE
	A0A8C0NLM2_CANLF	UniProtKB/TrEMBL
	E2RH47	ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID	VGNC:45736	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations